Skip to content

Fix repo_deps_libyear column typo: current_verion -> current_version #3482

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
shlokgilda wants to merge 5 commits into
base: main
Choose a base branch
from
Draft

Fix repo_deps_libyear column typo: current_verion -> current_version #3482

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
3e5ccfb
Fix repo_deps_libyear column typo: current_verion -> current_version
shlokgilda Dec 19, 2025
e29f9ca
Merge branch 'main' into fix/issue-2662-libyear-column-typo
shlokgilda Jan 7, 2026
c8b8004
fix: correct creation date in migration for libyear column typo
shlokgilda Jan 7, 2026
d57ab3d
revert: restore original column name in old migrations
shlokgilda Jan 8, 2026
b433375
fix: simplify migration 38, view was already dropped
shlokgilda Jan 8, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion augur/application/db/models/augur_data.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1981,7 +1981,7 @@ class RepoDepsLibyear(Base):
requirement = Column(String)
type = Column(String)
package_manager = Column(String)
current_verion = Column(String)
current_version = Column(String)
latest_version = Column(String)
current_release_date = Column(String)
latest_release_date = Column(String)
Expand Down
4 changes: 2 additions & 2 deletions augur/application/schema/20211006-augur-0.21.0-release.ndm2
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -28872,7 +28872,7 @@
},
{
"objectType": "TableField_PGSQL",
"name": "current_verion",
"name": "current_version",
"type": "varchar",
"length": 0,
"decimals": 0,
Expand All @@ -28882,7 +28882,7 @@
"defaultType": "None",
"defaultValue": "",
"comment": "",
"oldName": "current_verion",
"oldName": "current_version",
"typeOID": 1,
"fieldObjectType": "",
"objectTypeSchema": "",
Expand Down
30 changes: 30 additions & 0 deletions augur/application/schema/alembic/versions/38_fix_libyear_column_typo.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,30 @@
"""Fix typo in repo_deps_libyear column: current_verion -> current_version

Revision ID: 38
Revises: 37
Create Date: 2025-12-15
"""
from alembic import op
from sqlalchemy import text

# revision identifiers, used by Alembic.
revision = '38'
down_revision = '37'
branch_labels = None
depends_on = None


def upgrade():
conn = op.get_bind()
conn.execute(text("""
ALTER TABLE augur_data.repo_deps_libyear
RENAME COLUMN current_verion TO current_version;
"""))


def downgrade():
conn = op.get_bind()
conn.execute(text("""
ALTER TABLE augur_data.repo_deps_libyear
RENAME COLUMN current_version TO current_verion;
"""))
2 changes: 1 addition & 1 deletion augur/application/schema/alembic/versions/legacy/80.2-create-tables.sql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2906,7 +2906,7 @@ CREATE TABLE "augur_data"."repo_deps_libyear" (
"requirement" varchar COLLATE "pg_catalog"."default",
"type" varchar COLLATE "pg_catalog"."default",
"package_manager" varchar COLLATE "pg_catalog"."default",
"current_verion" varchar COLLATE "pg_catalog"."default",
"current_version" varchar COLLATE "pg_catalog"."default",
"latest_version" varchar COLLATE "pg_catalog"."default",
"current_release_date" varchar COLLATE "pg_catalog"."default",
"latest_release_date" varchar COLLATE "pg_catalog"."default",
Expand Down
4 changes: 2 additions & 2 deletions augur/application/schema/augur_full.sql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2129,7 +2129,7 @@ CREATE TABLE augur_data.repo_deps_libyear (
requirement character varying,
type character varying,
package_manager character varying,
current_verion character varying,
current_version character varying,
latest_version character varying,
current_release_date character varying,
latest_release_date character varying,
Expand Down Expand Up @@ -4725,7 +4725,7 @@ COPY augur_data.repo_dependencies (repo_dependencies_id, repo_id, dep_name, dep_
-- Data for Name: repo_deps_libyear; Type: TABLE DATA; Schema: augur_data; Owner: augur
--

COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_verion, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_version, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
\.


Expand Down
10 changes: 1 addition & 9 deletions augur/tasks/git/dependency_libyear_tasks/core.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -45,8 +45,7 @@ def generate_deps_libyear_data(logger, repo_id, path):
#'requirement' : dep['requirement'],
'type' : dep['type'],
'package_manager' : dep['package'],
#'current_version' : dep['current_version'], # 🔧 FIXED
'current_verion' : dep['current_version'],
'current_version' : dep['current_version'],
'latest_version' : dep['latest_version'],
'current_release_date' : dep['current_release_date'],
'latest_release_date' : dep['latest_release_date'],
Expand All @@ -57,13 +56,6 @@ def generate_deps_libyear_data(logger, repo_id, path):
'data_collection_date': date_scanned
}

#result = self.db.execute(self.repo_deps_libyear_table.insert().values(repo_deps))
#self.logger.info(f"Added dep: {result.inserted_primary_key}")
#insert_statement = s.sql.text("""
# INSERT INTO "repo_deps_libyear" ("repo_id","name","requirement","type","package_manager","current_verion","latest_version","current_release_date","latest_release_date","libyear","tool_source","tool_version","data_source","data_collection_date")
# VALUES (:repo_id, :name,:requirement,:type,:package_manager,:current_verion,:latest_version,:current_release_date,:latest_release_date,:libyear,:tool_source,:tool_version,:data_source, :data_collection_date)
#""").bindparams(**repo_deps)
#
to_insert.append(repo_deps)

bulk_insert_dicts(logger, to_insert, RepoDepsLibyear, ["repo_id","name","data_collection_date"])
4 changes: 2 additions & 2 deletions docker/database/augur-new-schema.sql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3894,7 +3894,7 @@ CREATE TABLE augur_data.repo_deps_libyear (
requirement character varying,
type character varying,
package_manager character varying,
current_verion character varying,
current_version character varying,
latest_version character varying,
current_release_date character varying,
latest_release_date character varying,
Expand Down Expand Up @@ -6832,7 +6832,7 @@ COPY augur_data.repo_dependencies (repo_dependencies_id, repo_id, dep_name, dep_
-- Data for Name: repo_deps_libyear; Type: TABLE DATA; Schema: augur_data; Owner: augur
--

COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_verion, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_version, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
\.


Expand Down
4 changes: 2 additions & 2 deletions docker/database/augur-retired-sql.schema
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2985,7 +2985,7 @@ CREATE TABLE augur_data.repo_deps_libyear (
requirement character varying,
type character varying,
package_manager character varying,
current_verion character varying,
current_version character varying,
latest_version character varying,
current_release_date character varying,
latest_release_date character varying,
Expand Down Expand Up @@ -5849,7 +5849,7 @@ COPY augur_data.repo_dependencies (repo_dependencies_id, repo_id, dep_name, dep_
-- Data for Name: repo_deps_libyear; Type: TABLE DATA; Schema: augur_data; Owner: augur
--

COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_verion, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_version, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
\.


Expand Down
8 changes: 4 additions & 4 deletions tests/entire_db.sql
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1941,7 +1941,7 @@ CREATE TABLE augur_data.repo_deps_libyear (
requirement character varying,
type character varying,
package_manager character varying,
current_verion character varying,
current_version character varying,
latest_version character varying,
current_release_date character varying,
latest_release_date character varying,
Expand Down Expand Up @@ -1983,14 +1983,14 @@ CREATE MATERIALIZED VIEW augur_data.explorer_libyear_detail AS
a.repo_name,
b.name,
b.requirement,
b.current_verion,
b.current_version,
b.latest_version,
b.current_release_date,
b.libyear,
max(b.data_collection_date) AS max
FROM augur_data.repo a,
augur_data.repo_deps_libyear b
GROUP BY a.repo_id, a.repo_name, b.name, b.requirement, b.current_verion, b.latest_version, b.current_release_date, b.libyear
GROUP BY a.repo_id, a.repo_name, b.name, b.requirement, b.current_version, b.latest_version, b.current_release_date, b.libyear
ORDER BY a.repo_id, b.requirement
WITH NO DATA;

Expand Down Expand Up @@ -6714,7 +6714,7 @@ COPY augur_data.repo_dependencies (repo_dependencies_id, repo_id, dep_name, dep_
-- Data for Name: repo_deps_libyear; Type: TABLE DATA; Schema: augur_data; Owner: augur
--

COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_verion, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
COPY augur_data.repo_deps_libyear (repo_deps_libyear_id, repo_id, name, requirement, type, package_manager, current_version, latest_version, current_release_date, latest_release_date, libyear, tool_source, tool_version, data_source, data_collection_date) FROM stdin;
\.


Expand Down
Loading