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Merged
merged 3 commits into from
Dec 9, 2024
Merged

Generate parser from cwltool extensions #337

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10e3c43
Generate parser from `cwltool` extensions
GlassOfWhiskey Dec 3, 2024
fb2e645
Building from extensions in CWL repos
GlassOfWhiskey Dec 5, 2024
5cb0a70
Added extension tests
GlassOfWhiskey Dec 6, 2024
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1 change: 1 addition & 0 deletions MANIFEST.in
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Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@ include testdata/workflows/*.cwl
include testdata/workflows/*.yaml
include testdata/types/*.yml
include testdata/checker_wf/*.cwl
include testdata/extensions/*.cwl
include cwl_utils/py.typed
include docs/conf.py docs/Makefile docs/_static/favicon.ico docs/requirements.txt
include docs/*.rst
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6 changes: 3 additions & 3 deletions Makefile
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Expand Up @@ -191,19 +191,19 @@ flake8: $(PYSOURCES)
cwl_utils/parser/cwl_v1_0.py: FORCE
schema-salad-tool --codegen python \
--codegen-parser-info "org.w3id.cwl.v1_0" \
https://github.com/common-workflow-language/common-workflow-language/raw/codegen/v1.0/CommonWorkflowLanguage.yml \
https://github.com/common-workflow-language/common-workflow-language/raw/codegen/v1.0/extensions.yml \
> $@

cwl_utils/parser/cwl_v1_1.py: FORCE
schema-salad-tool --codegen python \
--codegen-parser-info "org.w3id.cwl.v1_1" \
https://github.com/common-workflow-language/cwl-v1.1/raw/codegen/CommonWorkflowLanguage.yml \
https://github.com/common-workflow-language/cwl-v1.1/raw/codegen/extensions.yml \
> $@

cwl_utils/parser/cwl_v1_2.py: FORCE
schema-salad-tool --codegen python \
--codegen-parser-info "org.w3id.cwl.v1_2" \
https://github.com/common-workflow-language/cwl-v1.2/raw/codegen/CommonWorkflowLanguage.yml \
https://github.com/common-workflow-language/cwl-v1.2/raw/codegen/extensions.yml \
> $@

regen_parsers: cwl_utils/parser/cwl_v1_*.py
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6 changes: 3 additions & 3 deletions README.rst
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Expand Up @@ -152,13 +152,13 @@ Regenerate parsers
To regenerate install the ``schema_salad`` package and run:

``cwl_utils/parser/cwl_v1_0.py`` was created via
``schema-salad-tool --codegen python https://github.com/common-workflow-language/common-workflow-language/raw/codegen/v1.0/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_0" > cwl_utils/parser/cwl_v1_0.py``
``schema-salad-tool --codegen python https://github.com/common-workflow-language/common-workflow-language/raw/codegen/v1.0/extensions.yml --codegen-parser-info "org.w3id.cwl.v1_0" > cwl_utils/parser/cwl_v1_0.py``

``cwl_utils/parser/cwl_v1_1.py`` was created via
``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.1/raw/codegen/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_1" > cwl_utils/parser/cwl_v1_1.py``
``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.1/raw/codegen/extensions.yml --codegen-parser-info "org.w3id.cwl.v1_1" > cwl_utils/parser/cwl_v1_1.py``

``cwl_utils/parser/cwl_v1_2.py`` was created via
``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.2/raw/1.2.1_proposed/CommonWorkflowLanguage.yml --codegen-parser-info "org.w3id.cwl.v1_2" > cwl_utils/parser/cwl_v1_2.py``
``schema-salad-tool --codegen python https://github.com/common-workflow-language/cwl-v1.2/raw/codegen/extensions.yml --codegen-parser-info "org.w3id.cwl.v1_2" > cwl_utils/parser/cwl_v1_2.py``

Release
~~~~~~~
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