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Add mLLMCelltype: Cell type annotation using multiple LLMs#9

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Add mLLMCelltype: Cell type annotation using multiple LLMs#9
cafferychen777 wants to merge 1 commit intocsbl-br:mainfrom
cafferychen777:main

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Summary

  • Add mLLMCelltype to the list of applications that use the GPT API
  • mLLMCelltype is a comprehensive R/Python package for automated cell type annotation in single-cell RNA-seq data using multiple LLMs

About mLLMCelltype

mLLMCelltype is a cutting-edge tool that leverages multiple large language models (OpenAI GPT, Anthropic Claude, Google Gemini, DeepSeek, Qwen, etc.) for automated cell type annotation in single-cell RNA-seq analysis.

Key features:

  • 🤖 Multi-LLM Support: Works with 10+ different LLM providers
  • 🔬 Bioinformatics Focus: Specifically designed for single-cell RNA-seq data
  • 🐍🔷 Dual Language: Available in both R and Python
  • 🤝 Consensus Annotation: Combines predictions from multiple models
  • 🎯 Interactive Refinement: Allows manual review and correction
  • 🏢 Enterprise Ready: Supports custom base URLs for enterprise deployments

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This tool represents a significant advancement in computational biology by bringing the power of modern LLMs to single-cell analysis workflows.

🤖 Generated with Claude Code

mLLMCelltype is a comprehensive R/Python package for automated cell type annotation in single-cell RNA-seq data using multiple large language models (OpenAI, Anthropic, Google Gemini, etc.). It supports both R and Python environments with features like consensus annotation, interactive refinement, and custom base URL support for enterprise deployments.

GitHub: https://github.com/cafferychen777/mLLMCelltype
Paper: https://doi.org/10.1101/2025.04.10.647852
@csbl-usp csbl-usp requested a review from lubianat September 3, 2025 12:21
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