feat: python 3.13 support

[FilipPyrek]

Summary by CodeRabbit

Release Notes

• New Features

  • Added support for Python 3.13

• Bug Fixes

  • Fixed histogram extraction compatibility with NumPy 2.2+

• Chores

  • Upgraded Java runtime from version 11 to 17
  • Updated dependencies for Python 3.13 compatibility
  • Updated documentation reflecting current supported versions

[linear]

GRN-4947 Support Python 3.13

[coderabbitai]

Note

Reviews paused

Use the following commands to manage reviews:

• @coderabbitai resume to resume automatic reviews.
• @coderabbitai review to trigger a single review.

📝 Walkthrough

Walkthrough

This PR adds Python 3.13 support throughout the project and upgrades Java from version 11 to version 17. Changes include updating CI/CD workflows, documentation, configuration files (pyproject.toml, noxfile.py, .mise.toml), and Docker build environments. Additionally, error handling in deepnote_toolkit/ocelots/pandas/analyze.py is updated to catch ValueError instead of IndexError for NumPy 2.2+ compatibility, specifically handling the "Too many bins for data range" scenario.

Possibly related PRs

• #193: Modifies the same CI/test tooling files (noxfile.py, .github workflows, .mise.toml, README.md, pyproject.toml) for Python version matrices and test setup changes.

Suggested reviewers

• m1so
• jamesbhobbs
• hc2p

Pre-merge checks

❌ Failed checks (1 warning)

Check name	Status	Explanation	Resolution
Docstring Coverage	⚠️ Warning	Docstring coverage is 75.00% which is insufficient. The required threshold is 80.00%.	You can run @coderabbitai generate docstrings to improve docstring coverage.

✅ Passed checks (2 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title Check	✅ Passed	The title "feat: python 3.13 support" directly aligns with the primary objective of the changeset. Python 3.13 support is added across multiple critical files including noxfile.py, pyproject.toml, .cursorrules, CLAUDE.md, and CI/CD workflows. While the PR also includes secondary changes—Java 17 upgrades and a NumPy 2.2+ compatibility fix—the Python 3.13 support constitutes the main initiative. The title is clear, specific, and concise, accurately highlighting the most significant change without claiming to cover every modification (as expected per guidelines).

---

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[github-actions]

📦 Python package built successfully!

• Version: 1.0.0.dev17+abf85ce
• Wheel: deepnote_toolkit-1.0.0.dev17+abf85ce-py3-none-any.whl
• Install:

  pip install "deepnote-toolkit @ https://deepnote-staging-runtime-artifactory.s3.amazonaws.com/deepnote-toolkit-packages/1.0.0.dev17%2Babf85ce/deepnote_toolkit-1.0.0.dev17%2Babf85ce-py3-none-any.whl"

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 75.12%. Comparing base (059d347) to head (b0ca5c6).
⚠️ Report is 9 commits behind head on main.
✅ All tests successful. No failed tests found.

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #10      +/-   ##
==========================================
- Coverage   76.60%   75.12%   -1.48%     
==========================================
  Files          99       99              
  Lines        5476     5601     +125     
  Branches      748      782      +34     
==========================================
+ Hits         4195     4208      +13     
- Misses       1281     1393     +112     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

[FilipPyrek]

@coderabbitai pause

[coderabbitai]

✅ Actions performed

Reviews paused.

[deepnote-bot]

🚀 Review App Deployment Started

📝 Description	🌐 Link / Info
🌍 Review application	ra-10
🔑 Sign-in URL	Click to sign-in
📊 Application logs	View logs
🔄 Actions	Click to redeploy
🚀 ArgoCD deployment	View deployment
⏰ Last deployed	2025-11-03 15:19:07 (UTC)
📜 Deployed commit	6c8cbf514e3a51d7a9256742fe04d1ce36c9e2e3
🛠️ Toolkit version	abf85ce