Implement AnnotatedSequence slicing - #146

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diegozea wants to merge 2 commits into

codex/explain-todo--annotatedsequence-in-code

diegozea commented Jul 3, 2025

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Summary

implement getindex(::AnnotatedSequence, cols) with annotation handling
return a copy when slicing with : for annotated sequences
ensure colon slicing works for annotated aligned sequences
test colon slicing for AnnotatedAlignedSequence

Testing

julia --project -e 'push!(LOAD_PATH,"test"); using MIToSTests; MIToSTests.retest("MSA"); MIToSTests.retest("getindex")'

https://chatgpt.com/codex/tasks/task_b_6865a6f5c380832da01789a4ef95ee95


          Handle colon slicing for AnnotatedSequence

f75f4cb

diegozea added the codex label

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ChatGPT Codex Connector


          Fix AnnotatedSequence getindex test

398fadc

diegozea closed this

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