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Fix gzipped PDBML parsing - #148

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diegozea wants to merge 1 commit into
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codex/fix-issue-#147-in-mitos.jl
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Fix gzipped PDBML parsing#148
diegozea wants to merge 1 commit into
masterfrom
codex/fix-issue-#147-in-mitos.jl

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@diegozea

@diegozea diegozea commented Jul 4, 2025

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Summary

  • handle .xml.gz PDBML files by manually decompressing before XML parsing
  • reduce duplication inside _read

Testing

  • julia --project -e 'push!(LOAD_PATH, "test"); using MIToSTests; MIToSTests.retest("PDB"); MIToSTests.retest("Parse PDB and PDBML")'

https://chatgpt.com/codex/tasks/task_b_68679f536370832dbfd17ce1b87f6bad

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