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  1. mesp1 mesp1 Public

    Developmental atlas pipeline integrating Mesp1-lineage scRNA-seq across four mouse embryonic timepoints (E8.0-E10.5). Nextflow DSL2 + Seurat + fastMNN.

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  2. mouse-brain-e18 mouse-brain-e18 Public

    Single-cell multiome (RNA + ATAC) analysis pipeline applied to E18 mouse brain. Nextflow DSL2 + Seurat v5 + Signac with WNN integration. 13 cell types resolved, ATAC coverage tracks for lineage mar…

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  3. tbx1 tbx1 Public

    Four-phase scRNA-seq pipeline characterizing Tbx1 conditional knockout in cardiopharyngeal progenitors. Nextflow DSL2 + Seurat + scVI + DESeq2 + clusterProfiler.

    R

  4. tamoxifen-endothelial-cells tamoxifen-endothelial-cells Public

    Bulk RNA-seq DE analysis of tamoxifen effects on E15.5 mouse embryonic endothelial cells (GSE247449). Nextflow DSL2 + DESeq2 + clusterProfiler.

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