Update the paths in the Run.ipynb and Run_Initializing.ipynb to reflect the paths
path_gen: must be where you will have your code and functionspath_code: must point to the git repositorypath_data: must point to (initially empty) file store for storage of network, input, and simulation output
To run:
- First, Run_Initializing.ipynb to generate a 'Seed', a frozen randomized network
- Then, edit Run.py (inside the Functions folder). Look for “directory=f'/mnt/Data/Elias/CerebellarLoop/Code/CPP/CPP_Standalone_output/{seed_number}” change the “/mnt/Data/Elias/“ part to your directory.
- Finally edit Run.ipynb and run for simulation, eg. exp_run_range changes the simulation time