v3.2.2.post2

All-Atom Molecular Complex Support

• Added fold_all_atom() method to handle structure prediction for complexes containing proteins, nucleic acids (DNA/RNA), and ligands
• Introduced MolecularComplex and MolecularComplexResult classes for representing multi-molecule systems
• New StructurePredictionInput builder for constructing complex molecular inputs

MSA Improvements

• Refactored MSA handling with new dedicated MSA class in esm.utils.msa
• Added FastMSA for optimized MSA operations
• Implemented sequence filtering utilities including greedy selection and hhfilter integration
• Support for removing insertions from sequences

SDK Enhancements

• Added SequentialDataclass base class for improved dataclass operations
• Enhanced retry mechanism with better error handling and callback support
• Fixed pLDDT expansion for chain breaks in protein structures
• Added mean_hidden_state support for ESMC forward passes
• Improved tensor serialization and handling throughout the SDK

Bug Fixes

• Fixed pLDDT array length mismatch when chain breaks are present
• Corrected logits tensor handling to avoid unnecessary byte conversions
• Fixed retry decorator to properly handle exceptions and return values
• Updated mean embedding/hidden state handling in generation trimming

Documentation Updates

• Updated Forge API URLs in tutorial notebooks (removed /console suffix)
• Standardized token prompt messages across notebooks