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Flatiron Institute

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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 722 396

  2. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    C++ 404 100

  3. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 349 89

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 258 152

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 157 98

  6. FMM3D FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in thre…

    Fortran 145 52

Repositories

Showing 10 of 225 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 129 MIT 18 123 (1 issue needs help) 9 Updated Apr 2, 2026
  • numbl Public

    Numerical computing environment that aims to be compatible with Matlab

    flatironinstitute/numbl’s past year of commit activity
    TypeScript 6 Apache-2.0 1 1 5 Updated Apr 1, 2026
  • clair Public

    Clair (Clang Introspection and Reflection) tools. A set of clang tools developed for Flatiron/CCQ

    flatironinstitute/clair’s past year of commit activity
    C++ 19 Apache-2.0 3 2 1 Updated Apr 1, 2026
  • c2py Public

    Clair/c2py low level library

    flatironinstitute/c2py’s past year of commit activity
    C++ 6 Apache-2.0 1 0 2 Updated Apr 1, 2026
  • cryoSBI Public
    flatironinstitute/cryoSBI’s past year of commit activity
    Python 14 4 16 4 Updated Apr 1, 2026
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 47 Apache-2.0 6 7 (1 issue needs help) 1 Updated Apr 1, 2026
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 57 Apache-2.0 1 11 (2 issues need help) 1 Updated Apr 1, 2026
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    C++ 127 Apache-2.0 11 10 3 Updated Apr 1, 2026
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3 on the CPU or GPU

    flatironinstitute/finufft’s past year of commit activity
    C++ 404 100 42 (3 issues need help) 7 Updated Apr 1, 2026
  • psyphy Public

    Active-learning-driven adaptive experiments in psychophysics.

    flatironinstitute/psyphy’s past year of commit activity
    Python 5 MIT 2 31 (1 issue needs help) 0 Updated Mar 31, 2026
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