Batch smFISH pipeline for MIP-based cell/nucleus segmentation (Cellpose), spot detection (big-fish), SNR filtering, per-cell nuc/cyto counts; outputs AnnData, CSVs, and PDF reports.
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Batch smFISH pipeline for MIP-based cell/nucleus segmentation (Cellpose), spot detection (big-fish), SNR filtering, per-cell nuc/cyto counts; outputs AnnData, CSVs, and PDF reports.
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fmi-basel/au-smfish-flow
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Batch smFISH pipeline for MIP-based cell/nucleus segmentation (Cellpose), spot detection (big-fish), SNR filtering, per-cell nuc/cyto counts; outputs AnnData, CSVs, and PDF reports.
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