Search results

Detecting/correcting manifest errors (MEGA array) unearthed comparing genotype to WGS data

Status: Open.

#88 In freeseek/gtc2vcf;

· gtdoctor opened on Apr 8, 2025

Normalised BAF tag under FORMAT is not associated with the <ALT> allele

Status: Open.

#84 In freeseek/gtc2vcf;

· duran72 opened on Jan 31, 2025

Negative normalized intensities?

Status: Open.

#83 In freeseek/gtc2vcf;

· rajwanir opened on Jan 28, 2025

Plot variant (for Illumina data) gtc2vcf_plot.R error: Error: unexpected '\\' in "gtc2vcf_plot.R \"

Status: Open.

#82 In freeseek/gtc2vcf;

· duran72 opened on Jan 15, 2025

Records represented as [D/I] in manifest.

Status: Open.

#76 In freeseek/gtc2vcf;

· rajwanir opened on Aug 12, 2024

Drop marker if SourceSeq maps to different loci equally well.

Status: Open.

#74 In freeseek/gtc2vcf;

· rajwanir opened on Aug 7, 2024

Pseudo-autosomal regions (PAR).

Status: Open.

#72 In freeseek/gtc2vcf;

· rajwanir opened on Aug 1, 2024

Error while running linsolve1

Status: Open.

#70 In freeseek/gtc2vcf;

· teepean opened on Jul 10, 2024

Add an explicit FORMAT/TAG for illumina genotype?

Status: Open.

#69 In freeseek/gtc2vcf;

· rajwanir opened on Jun 21, 2024

ALLELE_A and ALLELE_B encoding in the VCF?

Status: Open.

#68 In freeseek/gtc2vcf;

· rajwanir opened on Jun 20, 2024

Loci skipped with SourceSeq mapping.

Status: Open.

#65 In freeseek/gtc2vcf;

· rajwanir opened on Apr 19, 2024

CNV and coordinates mapping issue?

Status: Open.

#64 In freeseek/gtc2vcf;

· rajwanir opened on Apr 19, 2024