Skip to content

Updating workflows/VGP-assembly-v2/Purge-duplicates-one-haplotype-VGP6b from 0.8.4 to 0.8.5 #969

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

Updating workflows/VGP-assembly-v2/Purge-duplicates-one-haplotype-VGP6b from 0.8.4 to 0.8.5 #969

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions workflows/VGP-assembly-v2/Purge-duplicates-one-haplotype-VGP6b/CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,10 @@
# Changelog

## [0.8.5] - 2025-10-06

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy2`

## [0.8.4] - 2025-09-29

### Automatic update
Expand Down
103 changes: 84 additions & 19 deletions ...ssembly-v2/Purge-duplicates-one-haplotype-VGP6b/Purging-duplicates-one-haplotype-VGP6b.ga
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -584,7 +584,16 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Map with minimap2",
"name": "fastq_input"
},
{
"description": "runtime parameter for tool Map with minimap2",
"name": "reference_source"
}
],
"label": null,
"name": "Map with minimap2",
"outputs": [
Expand Down Expand Up @@ -636,7 +645,12 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -905,7 +919,16 @@
"output_name": "split_fasta"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Map with minimap2",
"name": "fastq_input"
},
{
"description": "runtime parameter for tool Map with minimap2",
"name": "reference_source"
}
],
"label": null,
"name": "Map with minimap2",
"outputs": [
Expand Down Expand Up @@ -1310,7 +1333,7 @@
}
},
"tags": [],
"uuid": "0a6a7d53-6e4a-46e0-af6b-3e39bcc3ac88"
"uuid": "ac994370-7451-4b40-b805-54d69ba527e6"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -1530,7 +1553,12 @@
"output_name": "integer_param"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -1651,7 +1679,20 @@
"output_name": "alignment_output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -1760,7 +1801,16 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
},
{
"description": "runtime parameter for tool Purge overlaps",
"name": "function_select"
}
],
"label": null,
"name": "Purge overlaps",
"outputs": [
Expand Down Expand Up @@ -1858,7 +1908,12 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Merqury",
"name": "mode"
}
],
"label": null,
"name": "Merqury",
"outputs": [
Expand Down Expand Up @@ -2027,7 +2082,7 @@
},
"36": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy1",
"content_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy2",
"errors": null,
"id": 36,
"input_connections": {
Expand All @@ -2044,7 +2099,12 @@
"output_name": "output"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool Busco",
"name": "lineage"
}
],
"label": null,
"name": "Busco",
"outputs": [
Expand Down Expand Up @@ -2110,15 +2170,15 @@
"output_name": "summary_image"
}
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy1",
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy2",
"tool_shed_repository": {
"changeset_revision": "4e70d88adf2f",
"changeset_revision": "c5a90fa4b8dd",
"name": "busco",
"owner": "iuc",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"adv\": {\"evalue\": \"0.001\", \"limit\": \"3\", \"contig_break\": \"10\"}, \"busco_mode\": {\"mode\": \"geno\", \"__current_case__\": 0, \"use_augustus\": {\"use_augustus_selector\": \"metaeuk\", \"__current_case__\": 0}}, \"cached_db\": {\"__class__\": \"ConnectedValue\"}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"lineage\": {\"lineage_mode\": \"select_lineage\", \"__current_case__\": 1, \"lineage_dataset\": {\"__class__\": \"ConnectedValue\"}}, \"outputs\": [\"short_summary\", \"missing\", \"image\", \"gff\"], \"test\": null, \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
"tool_version": "5.8.0+galaxy1",
"tool_version": "5.8.0+galaxy2",
"type": "tool",
"uuid": "73b62ef3-0002-418e-9f10-22076c1e48f3",
"when": null,
Expand Down Expand Up @@ -2146,7 +2206,12 @@
"output_name": "get_seqs_purged"
}
},
"inputs": [],
"inputs": [
{
"description": "runtime parameter for tool gfastats",
"name": "mode_condition"
}
],
"label": "Convert purged fasta to gfa",
"name": "gfastats",
"outputs": [
Expand Down Expand Up @@ -3056,7 +3121,7 @@
}
},
"tags": [],
"uuid": "5bb3beb9-a051-469d-8ee2-dbbfae0389ff"
"uuid": "bf1007ed-bad0-4d7f-8944-889cb06f555d"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -3619,7 +3684,7 @@
}
},
"tags": [],
"uuid": "e15b06a1-0673-4e2c-ae70-dee3835ba909"
"uuid": "6bbd7fb5-3f5e-4fc5-b737-f4e5b92e825e"
},
"tool_id": null,
"type": "subworkflow",
Expand Down Expand Up @@ -3796,7 +3861,7 @@
"tags": [
"VGP_curated"
],
"uuid": "882b18ac-4a8c-4cf1-8c63-a85260bc37b9",
"uuid": "67e892d1-6fde-4fbb-9fca-2aa0f0baa0d7",
"version": 1,
"release": "0.8.4"
}
"release": "0.8.5"
}