Update MAGs workflow to 0.4 #975
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wm75
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Oct 7, 2025
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| "output_name": "output" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "label": null, | ||
| "name": "Extract element identifiers", | ||
| "outputs": [ | ||
| { | ||
| "name": "output", | ||
| "type": "txt" | ||
| } | ||
| ], | ||
| "position": { | ||
| "left": 318.90618896484375, | ||
| "top": 9.914764404296875 | ||
| }, | ||
| "post_job_actions": { | ||
| "ChangeDatatypeActionoutput": { | ||
| "action_arguments": { | ||
| "newtype": "tabular" | ||
| }, | ||
| "action_type": "ChangeDatatypeAction", | ||
| "output_name": "output" | ||
| } | ||
| }, | ||
| "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/collection_element_identifiers/collection_element_identifiers/0.0.2", | ||
| "tool_shed_repository": { | ||
| "changeset_revision": "d3c07d270a50", | ||
| "name": "collection_element_identifiers", | ||
| "owner": "iuc", | ||
| "tool_shed": "toolshed.g2.bx.psu.edu" | ||
| }, | ||
| "tool_state": "{\"input_collection\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}", | ||
| "tool_version": "0.0.2", | ||
| "type": "tool", | ||
| "uuid": "e0c0bcc7-4b35-4e5f-a661-ddea0ad484bc", | ||
| "when": null, | ||
| "workflow_outputs": [] | ||
| }, | ||
| "2": { | ||
| "annotation": "", | ||
| "content_id": "Paste1", | ||
| "errors": null, | ||
| "id": 2, | ||
| "input_connections": { | ||
| "input1": { | ||
| "id": 1, | ||
| "output_name": "output" | ||
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| "input2": { | ||
| "id": 1, | ||
| "output_name": "output" | ||
| } | ||
| }, | ||
| "inputs": [], | ||
| "label": null, | ||
| "name": "Paste", | ||
| "outputs": [ | ||
| { | ||
| "name": "out_file1", | ||
| "type": "input" | ||
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| "position": { | ||
| "left": 643.4659118652344, | ||
| "top": 8.522735595703125 | ||
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| "post_job_actions": { | ||
| "ChangeDatatypeActionout_file1": { | ||
| "action_arguments": { | ||
| "newtype": "tabular" | ||
| }, | ||
| "action_type": "ChangeDatatypeAction", | ||
| "output_name": "out_file1" | ||
| } | ||
| }, | ||
| "tool_id": "Paste1", | ||
| "tool_state": "{\"delimiter\": \"T\", \"input1\": {\"__class__\": \"ConnectedValue\"}, \"input2\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": 0, \"__rerun_remap_job_id__\": null}", | ||
| "tool_version": "1.0.0", | ||
| "type": "tool", | ||
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| "uuid": "a608b960-25af-4a9e-a4a9-5b12c885de08" | ||
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| "tags": [], | ||
| "uuid": "4c170af9-61ac-4814-aff0-72689f052c9f" | ||
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| "tool_id": null, | ||
| "type": "subworkflow", | ||
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| "workflow_outputs": [] | ||
| }, |
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Is it really worth it to have a subworkflow for just two simple steps?
|
one small cosmetic thing: we usually put the release near the top of the workflow between license and wf name. |
|
Thanks @paulzierep - I'll just send you the link to the workflow (in slack) so you can check it looks ok. |
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FOR CONTRIBUTOR:
Workflow updates see Changelog