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@alex-medvedev-msc alex-medvedev-msc released this 28 Jul 13:23
· 12 commits to master since this release
v1.8
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Learn about vigilant mode.

Added

  • Added --flow rapid option for using https://github.com/ZhiGroup/RaPID as a main IBD inference tool for phased datasets
  • Custom preprocessing for --flow rapid and --flow germline-king which does not lose any phase information
  • simbig workflow for generation of simulated datasets up to 500K samples
  • Parallel ersa relationship inference

Changed

  • Updated snakemake to the 7.30.2
  • Updated other packages
  • Reduced docker image size from 7.5GB to 4.5GB by merging conda environments into one
  • Fast polars-based IBD segments and relationship postprocessing in postprocess_ersa.py

Fixed

  • Added leftover memory flag so that it did not crash with MemoryError
  • Fixed error in outlier detection
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