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@iVis-at-Bilkent

i-Vis at Bilkent

i-Vis Research Lab at Bilkent University

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  1. pathway-mapper pathway-mapper Public

    PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways

    TypeScript 63 27

  2. newt newt Public

    A web application to visualize and edit pathway models

    JavaScript 59 31

  3. cytoscape.js-view-utilities cytoscape.js-view-utilities Public

    A Cytoscape.js extension to provide miscellenaous view utilities such as hiding and highlighting nodes/edges

    HTML 54 8

  4. cytoscape.js-expand-collapse cytoscape.js-expand-collapse Public

    A Cytoscape.js extension to expand/collapse nodes for better management of complexity of compound graphs

    JavaScript 137 42

  5. cytoscape.js-layout-utilities cytoscape.js-layout-utilities Public

    Miscellaneous utilities for placement of nodes or components complementary to a main layout algorithm

    TypeScript 16 7

  6. cytoscape.js-layout-service cytoscape.js-layout-service Public archive

    Web-service on cytoscape.js to layout graphs

    JavaScript 10 2

Repositories

Showing 10 of 55 repositories
  • sbgnviz.js Public

    A web based visualization tool for process description maps in SBGN

    iVis-at-Bilkent/sbgnviz.js’s past year of commit activity
    JavaScript 35 LGPL-3.0 20 3 0 Updated Jan 8, 2026
  • newt Public

    A web application to visualize and edit pathway models

    iVis-at-Bilkent/newt’s past year of commit activity
    JavaScript 59 LGPL-3.0 31 40 0 Updated Dec 31, 2025
  • chise.js Public

    A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

    iVis-at-Bilkent/chise.js’s past year of commit activity
    JavaScript 16 LGPL-3.0 10 6 0 Updated Dec 25, 2025
  • cytoscape.js-layout-utilities Public

    Miscellaneous utilities for placement of nodes or components complementary to a main layout algorithm

    iVis-at-Bilkent/cytoscape.js-layout-utilities’s past year of commit activity
    TypeScript 16 MIT 7 3 0 Updated Dec 24, 2025
  • cose-base Public

    Core module for compound spring embedder based layout styles

    iVis-at-Bilkent/cose-base’s past year of commit activity
    JavaScript 11 MIT 2 1 0 Updated Dec 23, 2025
  • cytoscape.js-layvo Public
    iVis-at-Bilkent/cytoscape.js-layvo’s past year of commit activity
    JavaScript 2 MIT 0 2 0 Updated Dec 22, 2025
  • pangenographer Public

    PanGenoGrapher (PG2): A tool for visual analysis of Pan Genomes using graphs

    iVis-at-Bilkent/pangenographer’s past year of commit activity
    TypeScript 5 MIT 0 2 0 Updated Dec 15, 2025
  • software-artifact-analyzer Public

    SAA: A tool to visually analyze varying software artifacts including source code files, pull requests, issues, and commits, as well as their links and their relationships with developers in a software project to improve the software development process

    iVis-at-Bilkent/software-artifact-analyzer’s past year of commit activity
    TypeScript 1 2 14 1 Updated Dec 14, 2025
  • sybvals Public

    SyBValS: Systems Biology Validation Service

    iVis-at-Bilkent/sybvals’s past year of commit activity
    JavaScript 2 MIT 0 3 0 Updated Nov 18, 2025
  • cytoscape.js-complexity-management Public

    A Cytoscape.js extension to provide a unified complexity management framework for compound graphs

    iVis-at-Bilkent/cytoscape.js-complexity-management’s past year of commit activity
    JavaScript 11 MIT 1 5 0 Updated Nov 5, 2025
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