This repository contains analysis code and WDL workflows developed for polygenic score (PGS) and genotype imputation in a thyroid cancer research project.
wdl/
WDL workflows and tasks for:- Coverage quality control
- Genotype likelihood generation
- Reference panel preparation
- Phasing (Eagle, Shapeit5)
These WDL workflows are designed to be run using Cromwell (locally or on Terra).
This repository reflects research workflows and is under active development.