DREAM CHALLENGE: FINRISK

How to participate:

We must register to the challenge and create a team with all of us (info here!)

Data

To run the code, download train/ and test/ folders into project root (two options):

• From the synapse if you are logged in, here
• In artemisa are the train/ and test/ folders. (/home/artemisa/DREAM-FINRISK/)

Project workflow

All code must be included in src/ folder. In this folder, we have an utils/ repository to stored those function and/or scripts for general stuffs (such as data preprocessing, etc.).

Each new model/pipeline must be have a specific folder in src/ (see baseline as example). The new models/pipelines have to import data from train/ and make predict using test/ data. The predicted results must be saved on output/ as .csv (see here for more information)

Basics

Import data

After download train/ and test/ folders, you can import both subsets with the following code:

source("src/utils/importPseq.r")
train <- pseq(subset = "train")
test <- pseq(subset = "test")