Shiny Seurat Docker Image

This repository contains a Dockerfile for building a Docker image that includes R, Shiny, and Seurat, along with other useful R packages. The images can be pulled from Docker Hub: jhoufred/joe-shiny-seurat.

Overview

• Base Image: This Docker image is built based on the rocker/shiny image.

• Seurat Integration: Includes crucial packages to support and utilize the Seurat package effectively.

• Enhanced Capabilities: Incorporates supplementary packages for features like email services and user management.

• Database Support: Provides built-in support for MySQL databases.

• Accessibility: The image can be accessed and downloaded from Docker Hub: jhoufred/joe-shiny-seurat.

Included Packages

Seurat package:

• SeuratObject

• Seurat

Data processing

• tidyverse

• tidydr

Database:

• DBI

• RMySQL

Email service:

• mailR

• uuid

Visuliazation:

• ComplexHeatmap

• circlize

• ggh4x

• ggpubr

Others:

• shinyWidgets

• rJava

• pool

• dotenv

Usage

To run the Docker container, use the following command:

docker run -it --rm -p 3838:3838 jhoufred/joe-shiny-seurat