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johndef64/README.md

Hi there 👋

johndef64

Languages and Tools:

Python R LaTeX

Matplotlib NumPy Pandas Plotly PyTorch scikit-learn SciPy

Anaconda PyCharm Visual Studio Code PyPi

Neo4J Arango DB MongoDB

Gimp Gnu Image Manipulation Program Krita

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  1. GRPM_system GRPM_system Public

    Computational Strategies in Nutrigenetics: Constructing a Reference Dataset of Nutrition-Associated Genetic Polymorphisms https://doi.org/10.1101/2023.08.04.23293659

    Jupyter Notebook 6

  2. nutrig-graphrag nutrig-graphrag Public

    Graph-based RAG system for biomedical nutrigenetic knowledge discovery. Enables natural language queries on gene-nutrient interactions, supports personalized nutrition counseling, and runs 100% loc…

    Jupyter Notebook 4

  3. AutoDock-Batch-Pipeline AutoDock-Batch-Pipeline Public

    Automated molecular docking pipeline for batch processing UniProt proteins and PubChem ligands using AutoDock Vina and Meeko. Zero-setup virtual screening with predefined drug-target pairs

    Python 1

  4. grpm_bertopic grpm_bertopic Public

    paper: https://link.springer.com/chapter/10.1007/978-3-031-78093-6_1

    Jupyter Notebook 3

  5. mychatbot mychatbot Public

    A Streamlit-based chatbot application with support for multiple AI providers and specialized assistants.

    Python 2

  6. grpm_missense grpm_missense Public

    The repository offers tools for GRPM Nutrigenomics analysis, focusing on missense variants. Includes R scripts, comprehensive annotations, and ProtVar access scripts.

    R 1