Search results

SqueezeMeta --restart in merged mode reruns 01.run_all_assemblies.pl instead of resuming merge step

Status: Open.

#1027 In jtamames/SqueezeMeta;

· elahehseifollahi-hue opened on Apr 23, 2026

Error when combining metagenomes and metatranscriptomes with 'noassembly' 'nobinning' flags

Status: Open.

#1026 In jtamames/SqueezeMeta;

· carleton-envbiotech opened on Apr 21, 2026

Error in step 17 using test.samples

Status: Open.

#1025 In jtamames/SqueezeMeta;

· Saferr03 opened on Apr 16, 2026

EOF with SQueezeMetaDB.tar.gz

Status: Open.

#1024 In jtamames/SqueezeMeta;

· Saferr03 opened on Apr 4, 2026

sqm_reads.pl error at diamond stage

Status: Open.

#1021 In jtamames/SqueezeMeta;

· bentsch opened on Mar 17, 2026

Comparison samples prok-mainly vs mixed prok/euk

Status: Open.

#1020 In jtamames/SqueezeMeta;

· HannahBenisty opened on Mar 4, 2026

Alternative SubsetFun

Status: Open.

#1019 In jtamames/SqueezeMeta;

· JackDettoLoco opened on Mar 4, 2026

Stopping TAXONOMIC ASSIGNMENT: 06.lca.pl

Status: Open.

#1018 In jtamames/SqueezeMeta;

· Mandeepumra opened on Feb 24, 2026

Unknown option: force_overwrite for sqm_reads.pl

enhancementNew feature or requestNew feature or request

SQM_reads

Status: Open.

#1015 In jtamames/SqueezeMeta;

· SimonChen1997 opened on Jan 22, 2026

SqueezeMeta 1.65post1 gives checkM errors and reinstall can't connect to host

Status: Open.

#1002 In jtamames/SqueezeMeta;

· dutchscientist opened on Sep 19, 2025

sqmreads2tables.py AssertionError

bugSomething isn't workingSomething isn't working

sqm_longreads

Status: Open.

#990 In jtamames/SqueezeMeta;

· CarlosNavr opened on Jul 4, 2025

Combining results from multiple samples for downstream analysis

Status: Open.

#984 In jtamames/SqueezeMeta;

· eoinoh91 opened on May 26, 2025