v2.1.0-natprot

Based on the PyTorch (v2.1.0) implementation of OrganoidTracker, this includes additional plug-ins and sample datafiles as included in the Nat Protocols publication.

v2.0.0

This contains the stable version of the TensorFlow implementation of OrganoidTracker, which was used for the publication: Betjes, M.A., Kok, R.N.U., Tans, S.J. et al. Cell tracking with accurate error prediction. Nat Methods 22, 2400–2410 (2025). https://doi.org/10.1038/s41592-025-02845-6

v2.1.0

This release re-implements v2.0.0 in PyTorch, rather than TensorFlow. However, the same functionality as described in the publication below is retained. Betjes, M.A., Kok, R.N.U., Tans, S.J. et al. Cell tracking with accurate error prediction. Nat Methods 22, 2400–2410 (2025). https://doi.org/10.1038/s41592-025-02845-6

v1.0.0

This contains the original release of OrganoidTracker, which was used for the publication: Kok, R.N.U., Hebert L., Huelsz-Prince, G. et al. OrganoidTracker: Efficient cell tracking using machine learning and manual error correction. PLOS ONE 15(10), e0240802 (2020). https://doi.org/10.1371/journal.pone.0240802