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Add support for 10x GEM-X Flex v2 probe set reference

Status: Open.

#451 In lilab-bcb/cumulus;

· edwestr opened on Dec 18, 2025

Error with quay.io/cumulus docker

Status: Open.

#447 In lilab-bcb/cumulus;

· yutarohtanaka opened on Nov 12, 2025

Using Cumulus on Terra

Status: Open.

#442 In lilab-bcb/cumulus;

· seanken opened on Jul 28, 2025

Running cellranger multi for count and vdj only

Status: Open.

#437 In lilab-bcb/cumulus;

· majorkazer opened on May 1, 2025

Cellranger arc running out of disk space

Status: Open.

#436 In lilab-bcb/cumulus;

· nchernia opened on Apr 4, 2025

hg19 genome

Status: Open.

#393 In lilab-bcb/cumulus;

· v-mahughes opened on Nov 15, 2023

feature barcode length limit cannot exceed 21

Status: Open.

#383 In lilab-bcb/cumulus;

· yuzhouevelyntong opened on Jun 2, 2023

Job starsolo_count.run_starsolo:NA:1 exited with return code 1 which has not been declared as a valid return code. See 'continueOnReturnCode' runtime attribute for more details.

Status: Open.

#378 In lilab-bcb/cumulus;

· ymjzhang opened on Apr 12, 2023

Add scTE option for quantification

Status: Open.

#352 In lilab-bcb/cumulus;

· mikecuoco opened on Aug 10, 2022

Demultiplexing genetic-pooled samples fails when VCF is provided

Status: Open.

#312 In lilab-bcb/cumulus;

· mhulke opened on Mar 17, 2022

Improve error messages for incorrectly formatted input

Status: Open.

#167 In lilab-bcb/cumulus;

· slowkow opened on Feb 17, 2021