Release v0.4.2

What's New

See individual changes below.

Features

• Adds pick-base-crossovers step
• Integrate recombine-gvcfs into the v2 pipeline
• Adds sort-gvcfs which is a thin wrapper to bcftools sort
• Update example v2 YAML config for additional steps

Bug Fixes

• None

Breaking Changes

• None

Installation

Download the appropriate archive for your system:

• seq_sim-v0.4.2.tar - Unix/Linux/macOS
• seq_sim-v0.4.2.zip - Windows

Quick Start

# Extract the archive
tar -xf seq_sim-v0.4.2.tar
# or
unzip seq_sim-v0.4.2.zip

# Run the application
./seq_sim-v0.4.2/bin/seq_sim --help

Requirements

• Java 21 or higher

Full Changelog

Full Changelog: v0.4.1...v0.4.2