Use meryl ploidy instead of kmerHistToPloidyDepth.jar in filtering#176
Open
ASLeonard wants to merge 1 commit intomarbl:masterfrom
Open
Use meryl ploidy instead of kmerHistToPloidyDepth.jar in filtering#176ASLeonard wants to merge 1 commit intomarbl:masterfrom
meryl ploidy instead of kmerHistToPloidyDepth.jar in filtering#176ASLeonard wants to merge 1 commit intomarbl:masterfrom
Conversation
meryl ploidy is also in meryl v1.4.1, and removes an extra dependency
Author
|
This requires marbl/meryl@0fc8020, but the meryl shipped in canu is one commit ahead (marbl/meryl@345c69a), so might already be in the |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
meryl ploidy is also in meryl v1.4.1, and removes the java/jar dependency.
The ploidy output is like
so we now filt based on the ceil of the noise-trough since
meryl greater-thanonly takes integer thresholds