#With conda
conda env create -f environment.yml
#Activate Environment
conda activate xcorr-reimplementation
#Run
python xcorrcli.py [OPTIONS] SAMPLE_FILENAME PROTEIN_DATABASE
| Argument | Type | Description |
|---|---|---|
| sample_filename | TEXT | The name of the sample file [required] |
| protein_database | TEXT | The name of the protein database file [required] |
| Option | Type | Description |
|---|---|---|
| --p | INTEGER | Amount of processes to use in parallel [default: cpu_count() - 2] |
| --s | INTEGER | Amount of spectra loading at a time [default: 5000] |
| --ps | Predict the spectrum [default: no-ps] |