Skip to content
@merenlab

Meren Lab

Pinned Loading

  1. anvio anvio Public

    An analysis and visualization platform for 'omics data

    Python 491 152

  2. oligotyping oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    Python 41 22

  3. illumina-utils illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    Python 93 30

Repositories

Showing 10 of 23 repositories
  • anvio Public

    An analysis and visualization platform for 'omics data

    merenlab/anvio’s past year of commit activity
    Python 491 GPL-3.0 152 174 8 Updated Jan 9, 2026
  • merenlab.org Public

    Web content for Meren Lab

    merenlab/merenlab.org’s past year of commit activity
    HTML 11 MIT 31 2 0 Updated Jan 7, 2026
  • anvio.org Public

    The anvi'o community web page

    merenlab/anvio.org’s past year of commit activity
    HTML 6 14 2 1 Updated Jan 6, 2026
  • rosalind Public

    A simple Meren Lab bot to notify our Slack regarding our jobs on the HPC System ROSA at UOL

    merenlab/rosalind’s past year of commit activity
    Python 0 0 0 0 Updated Dec 21, 2025
  • clusterize Public Forked from ekiefl/clusterize

    The most basic SLURM wrapper

    merenlab/clusterize’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Dec 5, 2025
  • illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    merenlab/illumina-utils’s past year of commit activity
    Python 93 GPL-2.0 30 7 0 Updated Nov 24, 2025
  • scholarly-report Public

    A few tools to generate reports for a bunch of scientists using their Google Scholar profiles.

    merenlab/scholarly-report’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 12, 2025
  • reads-for-assembly Public

    Simulate metagenomic short reads from one or more populations.

    merenlab/reads-for-assembly’s past year of commit activity
    Python 26 GPL-2.0 4 0 0 Updated Jan 29, 2025
  • public-marine-omics-metadata Public

    Semi-curated metadata for marine metagenomes (and other 'omics data types)

    merenlab/public-marine-omics-metadata’s past year of commit activity
    R 1 0 4 0 Updated Sep 18, 2024
  • oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    merenlab/oligotyping’s past year of commit activity
    Python 41 GPL-2.0 22 5 0 Updated Jun 24, 2024
View all repositories

Most used topics

Loading…