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Regression tests changes in the develop #2024

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8 changes: 4 additions & 4 deletions regression/presets/analyze/10x-5gex-cdr3.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -446,10 +446,10 @@ exportCloneGroups:
qc:
checks:
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
8 changes: 4 additions & 4 deletions regression/presets/analyze/10x-5gex-full-length.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -451,10 +451,10 @@ exportCloneGroups:
qc:
checks:
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
8 changes: 4 additions & 4 deletions regression/presets/analyze/10x-sc-5gex.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -446,10 +446,10 @@ exportCloneGroups:
qc:
checks:
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-sc-xcr-vdj-fast.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -729,31 +729,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-sc-xcr-vdj-gemx-v3.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -726,31 +726,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-sc-xcr-vdj-rapid.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -585,31 +585,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-sc-xcr-vdj.yaml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -726,31 +726,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-vdj-bcr-full-length.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -726,31 +726,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-vdj-bcr.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -726,31 +726,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
28 changes: 14 additions & 14 deletions regression/presets/analyze/10x-vdj-tcr-alias-multi-barcode-test.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -756,31 +756,31 @@ exportCloneGroups:
qc:
checks:
- type: SuccessfullyAlignedReads
upper: 0.8
middle: 0.6
upper: 0.6
middle: 0.4
label: Successfully aligned reads
- type: UnassignedAlignments
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Unassigned alignments in clonotype assembly
- type: AlignmentsDroppedLowQuality
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Alignments dropped due to low sequence quality
- type: ReadsDroppedInTagRefinement
upper: 0.3
middle: 0.15
upper: 0.5
middle: 0.3
label: Reads dropped in tags error correction and filtering
- type: TagArtificialDiversityEliminated
tag: CELL
upper: 0.8
middle: 0.7
upper: 0.9
middle: 0.8
label: CELLs artificial diversity eliminated
- type: ReadsDroppedInTagFiltering
upper: 0.2
middle: 0.1
upper: 0.4
middle: 0.2
label: Reads dropped in tags filtering
- type: CellBarcodesWithFoundGroups
upper: 0.9
middle: 0.8
upper: 0.75
middle: 0.6
label: Cell barcodes used in result groups
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