Search results

Error when running SHEPHERD on single patient data

Status: Open.

#16 In mims-harvard/SHEPHERD;

· pailozka opened on Sep 9, 2025

Access different versions of HP.obo

Status: Open.

#15 In mims-harvard/SHEPHERD;

· HelloWorldLTY opened on Sep 4, 2025

AttributeError when running predict.py on patients_like_me task

Status: Open.

#14 In mims-harvard/SHEPHERD;

· pailozka opened on Aug 11, 2025

KeyError when running predict.py

Status: Open.

#13 In mims-harvard/SHEPHERD;

· pailozka opened on Aug 6, 2025

TypeError while running predict.py

Status: Open.

#12 In mims-harvard/SHEPHERD;

· pailozka opened on Aug 5, 2025

Missing file from hparams.py

Status: Open.

#11 In mims-harvard/SHEPHERD;

· pailozka opened on Aug 5, 2025

KeyError: 'alpha' when executing predict.py

Status: Open.

#8 In mims-harvard/SHEPHERD;

· Vincent-Ustach opened on Aug 21, 2024

remove equals sign from filename in add_spl_to_patients.py

Status: Open.

#7 In mims-harvard/SHEPHERD;

· Vincent-Ustach opened on Aug 21, 2024

Missing top_10_similar_genes_sim Data File

Status: Open.

#6 In mims-harvard/SHEPHERD;

· ejin700 opened on Aug 20, 2024

NeighborSampler duplicates batch size - implementation question

Status: Open.

#4 In mims-harvard/SHEPHERD;

· Guykor opened on May 30, 2023

omim_to_mondo_dict.pkl is missing (preprocess_mygene2.py)

Status: Open.

#3 In mims-harvard/SHEPHERD;

· Guykor opened on Apr 11, 2023

Environment setup problem on Mac

Status: Open.

#1 In mims-harvard/SHEPHERD;

· Guykor opened on Mar 7, 2023