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mohamedelrefaiy/README.md

Mohamed Elrefaiy

I build AI agents that do real work β€” and quantum models that describe real physics.

Ph.D. Candidate at UT Austin Β· Software Engineer Β· Vibe coder

Website LinkedIn Email


By day I model quantum systems at the molecular scale. By night I ship AI-powered tools that solve problems I actually have β€” an agent that controls my Google Workspace, a tool that turns job descriptions into tailored CVs without sounding like AI wrote them, and open-source packages used by other researchers.

Currently open to software engineering and data science roles.


What I'm building

FlowSpace β€” Google Workspace, unified

An AI agent with 23 tools that reads, writes, and acts across your Drive, Gmail, Calendar, and Tasks. Not a chatbot β€” it actually sends emails, creates events, and finds documents. Write operations go through an approval step so you stay in control.

FlowSpace dashboard

TypeScript Node Claude API Google APIs


kairos β€” Puts your potential into words

Most people undersell themselves not because they lack the work, but because they can't articulate it. kairos helps you surface what you've actually done, find the thread that connects it, and translate that into a tailored CV that reveals who you really are β€” not a polished version of someone else.

Claude Code HTML Prompt Engineering


Scientific software

Project What it does
Alprotein Excitonic Hamiltonians and optical spectra for molecular aggregates
NeuralFinance Neural networks for financial time-series prediction
pdbtoolkits PDB protein structure parsing and analysis
publication-scripts Reproducible code from my peer-reviewed papers

Skills

Core

Python TypeScript PyTorch Google Cloud

AI Engineering

Claude Code Prompt Engineering OpenAI Codex OpenCode SpecKit Cursor MCP Servers


Research

The University of Texas at Austin β€” Ph.D. Candidate
Quantum mechanical modeling of molecular aggregates Β· optical spectra Β· excitonic systems

I write production-quality Python packages to model the physics of light-harvesting molecular systems, then validate them against experimental data. The code ships as open-source; the results go into journals.

β†’ Reproducible code from my papers


Want to collaborate or just talk shop? Reach out.

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  1. flowspace flowspace Public

    Personal Google Workspace dashboard with AI chat agent

    TypeScript

  2. kairos kairos Public

    Your AI job search strategist: assess fit, tailor your CV, stress-test it, and prep for interviews, all from the terminal.

    HTML

  3. Alprotein Alprotein Public

    Alprotein: A modular toolkit for excitonic Hamiltonians and optical spectra of molecular aggregates

    Python

  4. publication-scripts publication-scripts Public

    A collection of code, workflows, and analysis files supporting my research papers across multiple years and projects.

    Python

  5. NeuralFinance NeuralFinance Public

    This is the Alpha release of the Neural Finance package.

    Python 2

  6. pdbtoolkits pdbtoolkits Public

    Python toolkit for parsing, analyzing, and manipulating PDB protein structure files

    Python