MokaGuys
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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_happy
dnanexus_happy PublicDNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval
Shell 1
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dnanexus_ED_cnv_calling
dnanexus_ED_cnv_calling PublicPerforms CNV calling using ExomeDepth.
Shell 1
Repositories
- dnanexus_RPKM Public
SUPERSEDED BY EXOME DEPTH. DNAnexus app that uses moka-guys/RPKM to perform RPKM analysis
moka-guys/dnanexus_RPKM’s past year of commit activity - dnanexus_multiqc Public
DNAnexus app running MultiQC to generate run wide quality control (QC) using the outputs from MokaAMP, MokaPipe and MokaWES pipelines
moka-guys/dnanexus_multiqc’s past year of commit activity - nf_qiaseq Public
moka-guys/nf_qiaseq’s past year of commit activity - turing_workstation_crontab Public
moka-guys/turing_workstation_crontab’s past year of commit activity - gstt_primer_design Public
moka-guys/gstt_primer_design’s past year of commit activity - ALU_insertion Public
moka-guys/ALU_insertion’s past year of commit activity - ALU_insertion_DNAnexus Public
moka-guys/ALU_insertion_DNAnexus’s past year of commit activity
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