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chore: back-merge main into develop (v0.0.9)#8

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rhshah wants to merge 3 commits intodevelopfrom
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chore: back-merge main into develop (v0.0.9)#8
rhshah wants to merge 3 commits intodevelopfrom
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@rhshah rhshah commented May 7, 2026

Standard Git Flow back-merge after v0.0.9 release tag.

rhshah added 2 commits May 7, 2026 13:12
Triple version bump (settings.ini, __init__.py, nextflow.config)

Documentation:
- pipeline-cli.md: Replace --top-n with --top-percentile, add Feature Selection tab
- statistical-tests.md: Extend flowchart, add Feature Selection Scoring section
- dashboard-guide.md: Update volcano (AUC x-axis), cards (AUC+MI), add QC scatter
- models-and-metrics.md: Add selection_qc to JSON schema (44 -> 45 fields)

Changelog: Finalize v0.0.9 date, sync to docs/changelog.md
…t rules

Separate 'deploy-pages' job (with github-pages environment) from the
main 'release' job (PyPI, GHCR, GitHub Release, docs build). This
prevents environment protection rules from blocking the entire pipeline.
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