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jefferis merged 2 commits into from
Oct 5, 2025
Merged

Update test baselines for v1.2.1 #185

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fb3a038
Switch to hemibrain:v1.2.1
jefferis Oct 5, 2025
11e71b4
update baselines for v1.2.1
jefferis Oct 5, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/R-CMD-check.yaml
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Expand Up @@ -32,7 +32,7 @@ jobs:
_R_CHECK_DONTTEST_EXAMPLES_: FALSE
_R_CHECK_CRAN_INCOMING_REMOTE_: false
_R_CHECK_TESTS_NLINES_: 0
neuprint_dataset: hemibrain:v1.0.1
neuprint_dataset: hemibrain:v1.2.1
neuprint_server: https://neuprint.janelia.org
neuprint_token: ${{ secrets.NEUPRINT_TOKEN }}
R_KEEP_PKG_SOURCE: yes
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2 changes: 1 addition & 1 deletion .github/workflows/test-coverage.yaml
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Expand Up @@ -19,7 +19,7 @@ jobs:
_R_CHECK_DONTTEST_EXAMPLES_: FALSE
_R_CHECK_CRAN_INCOMING_REMOTE_: false
_R_CHECK_TESTS_NLINES_: 0
neuprint_dataset: hemibrain:v1.0.1
neuprint_dataset: hemibrain:v1.2.1
neuprint_server: https://neuprint.janelia.org
neuprint_token: ${{ secrets.NEUPRINT_TOKEN }}

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2 changes: 1 addition & 1 deletion R/conn.R
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Expand Up @@ -94,7 +94,7 @@
#' server other than the one specified by the \code{neuprint_server}
#' environment variable.
#'
#' \preformatted{neuprint_dataset = "hemibrain:v1.0"}
#' \preformatted{neuprint_dataset = "hemibrain:v1.1"}
#'
#' @section Options: Although setting environment variables is the recommended
#' approach, you can also set R startup options e.g. in your \code{.Rprofile}
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2 changes: 1 addition & 1 deletion README.Rmd
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Expand Up @@ -76,7 +76,7 @@ Make sure you have a blank line at the end of your `.Renviron` file. Note that
you can optionally specify a default dataset:

```{r, eval=FALSE}
neuprint_dataset = "hemibrain:v1.0"
neuprint_dataset = "hemibrain:v1.1"
```

if your neuPrint server has more than one dataset. For further information
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -109,7 +109,7 @@ Make sure you have a blank line at the end of your `.Renviron` file.
Note that you can optionally specify a default dataset:

``` r
neuprint_dataset = "hemibrain:v1.0"
neuprint_dataset = "hemibrain:v1.1"
```

if your neuPrint server has more than one dataset. For further
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2 changes: 1 addition & 1 deletion man/neuprint_login.Rd
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2 changes: 1 addition & 1 deletion tests/testthat/test-conn.R
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Expand Up @@ -18,7 +18,7 @@ test_that("neuprint_connection works", {
skip_if_offline()
expect_warning(expect_is(
conn <- neuprint_login(server = "neuprint.janelia.org",
dataset = 'hemibrain:v1.0.1',
dataset = 'hemibrain:v1.2.1',
Cache = F, Force = T),
"neuprint_connection"
),
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2 changes: 1 addition & 1 deletion tests/testthat/test-connectivity.R
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Expand Up @@ -142,7 +142,7 @@ test_that("other connectivity functions work", {
# check that results for one neuron are consistent with the same
# neuron as part of a larger query
c11.sel=c11[names(c1)]
c11.sel=c11.sel[!is.na(c11.sel$`2002436731_weight`),,drop=FALSE]
c11.sel=c11.sel[!is.na(c11.sel$`1734350788_weight`),,drop=FALSE]
c11.sel=c11.sel[order(c11.sel$input),,drop=FALSE]
c1=c1[order(c1$input),,drop=FALSE]
expect_equal(c1, c11.sel)
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4 changes: 2 additions & 2 deletions tests/testthat/test-cosine.R
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Expand Up @@ -3,11 +3,11 @@ test_that("neuprint_cosine_matrix works", {
skip_if(as.logical(Sys.getenv("SKIP_NP_SERVER_TESTS")))
expect_known_hash(
cm <- neuprint_cosine_matrix("/DA[1-3].*PN", grepl("ORN",type), partners='in'),
hash='f69bb3c63d')
hash='8e4e615aa3')
expect_known_hash(
cm2 <- neuprint_cosine_matrix("/DA[1-3].*PN", grepl("ORN",type), partners='in',
group='type', details='type'),
'8ea9ca29f1')
'86cee222fe')

expect_silent(neuprint_cosine_plot(cm))
expect_silent(
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2 changes: 1 addition & 1 deletion vignettes/hemibrain_opns.Rmd
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Expand Up @@ -69,7 +69,7 @@ The main point is that you can then edit your R.environ file to contain informat

`neuprint_token="YOUR_TOKEN_HERE"`
`neuprint_server='https://neuprint.janelia.org/'`
`neuprint_dataset='hemibrain:v1.0'`
`neuprint_dataset='hemibrain:v1.1'`

Leave a blank line at the end of the file.

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