Error: Exception in thread "Task submitter" java.lang.OutOfMemoryError: Java heap space #6837
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desmodus1984
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Expected behavior and actual behavior
It should terminate after an error, right?
Steps to reproduce the problem
I can't share my data but I will share the code...
I ran #InterproScan @ebi-pf-team and I ran it with 16 parallel processes/cores. I am running on a workstation with Linux, 16 cores/ 32 GB RAM.
I used the following code:
I ran well but then I got this error:
1st- I ran this on the Documents folder and there is no .nextflow.log there, nor I can't make sense where it should or ought to be. I thought it would be in the same directory where I ran, and it is not there. So, I can't upload it because I can't find it.
2nd. My data is sensitive so I can't share it. I shared the code, hope someone can help me how to make it run in my system - as described above.
3rd. Normally, after a code runs into an error, the shell returns to the point where I can type/write on the command line - AND the shell is still like running the code- though, the CPUs are not working or active.
Environment
Nextflow version: [?]
nextflow version 25.10.3.10983
Java version: [?]
java --version
openjdk 21.0.9 2025-10-21
OpenJDK Runtime Environment (build 21.0.9+10-Ubuntu-124.04)
OpenJDK 64-Bit Server VM (build 21.0.9+10-Ubuntu-124.04, mixed mode, sharing)
Operating system: [macOS, Linux, etc] - Linux
Bash version: (use the command
$SHELL --version)$SHELL --versionGNU bash, version 5.2.21(1)-release (x86_64-pc-linux-gnu)
Copyright (C) 2022 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later http://gnu.org/licenses/gpl.html
This is free software; you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.
Additional context
(Add any other context about the problem here)
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