Long process

[amirdehsarvi]

Hello,

This might be a naive question as I am new to NF, but I have a pipeline that has multiple NF tasks/modules. One of the steps/modules, takes about 50min and cannot be broken into smaller tasks. Unfortunately, when I run the workflow on the HPC, after monitoring that the tasks before this specific one get completed, nextflow exits in my terminal and submits a slurm job for that task. Unfortunately, this means that I have to follow that slurm job, which finishes successfully, but the following tasks never start. I have been playing around with multiple tuples and have edited my config file several times without success. Anyone has any ideas as to how I should fix this?

Thank you in advance,
Amir