nextflow/scaleRNA pipeline using conda as a dependency manager not working

[itaiVfein]

I am trying to run the nextflow/scaleRNA pipeline using conda as a dependency manager.
I am testing the test run example: #nextflow run /sci/labs/ariel.chipman/itai.fein/ScaleRna-master -profile slurm_conda -c /sci/labs/ariel.chipman/itai.fein/my_hpc.config -params-file /sci/labs/ariel.chipman/itai.fein/ScaleRna-master/docs/examples/runParams.yml --outDir /sci/labs/ariel.chipman/itai.fein/scaler_test_output -resume

I made a custom "my_hpc.config" file, trying to specify a Slurm run, but I am getting the following error:

Traceback (most recent call last):
File "/sci/labs/ariel.chipman/itai.fein/ScaleRna-master/bin/sniff_input_reads.py", line 16, in
import pandas as pd
ModuleNotFoundError: No module named 'pandas'

Is there anyone who has used the nextflow/scaleRNA pipeline using conda on a Slurm server that can help me?

• Nextflow version: 25.04.6
• Java version:
  openjdk version "17.0.11" 2024-04-16
  OpenJDK Runtime Environment (build 17.0.11+9-Debian-1deb12u1)
  OpenJDK 64-Bit Server VM (build 17.0.11+9-Debian-1deb12u1, mixed mode, sharing)
• Operating system: Linux SLURM server
• Bash version: zsh 5.9 (x86_64-debian-linux-gnu)

nextflow.log.txt
nextflow_test.out.txt
nextflow_test.sh