Changes
- add gene model length filtering prior to consensus #28 (01cc254)
- fix taxonomy selector; #30 (b752659)
- fix failing test due to change in function (0f6651f)
- fix parsing annotations in annotate (563315f)
- provide multiple ways of training genemark and using hints for prediction #24 (d9578e8)
- make memory aware abinitio default #22 (f8ac1c8)
- better parsing of annotation data #25 (196bf62)
- limit training models via CLI parameter #24 (4d05412)
- update memory requirements/predictions #22 (4bfec78)
- clean up logging in abinitio #23 (f2d52f8)
- fix default predict after memory changes (ff71504)
- add ability to track memory usage for ab initio #22 (8652117)
- Fix release notes generation for first release (no previous tags) (9a30039)
- Merge branch 'main' of https://github.com/nextgenusfs/funannotate2 (c3f8b28)
- Fix GitHub release checkout to handle tag properly (2460fcc)
- Update CITATION.cff to version 25.7.1 [skip ci] (762c69f)
- Fix GitHub Actions permissions for CITATION.cff updates in production release workflow (e137bf2)
Full Changelog: 25.7.1...v2025.11.1