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Pull requests: nextstrain/mpox

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Pull requests list

Ingest from Pathoplexus, adapt phylogenetic to use Pathoplexus accessions
#342 opened Oct 17, 2025 by corneliusroemer • Draft
2 tasks
1
chore(deps/ci): upgrade pre-commit hook versions for snakemake and toml-sort
#338 opened Sep 18, 2025 by corneliusroemer Loading…
1 task
phylogenetic: Use augur subsample
#334 opened Aug 26, 2025 by victorlin • Draft
1 of 4 tasks
@victorlin
phylogenetic: Support nextstrain run (alternative)
#330 opened Jul 23, 2025 by joverlee521 • Draft
2 tasks
(WIP) phylogenetic: Support nextstrain run
#327 opened Jul 9, 2025 by joverlee521 • Draft
2 tasks
10
Switch to using pathoplexus for nextclade
#323 opened Jul 2, 2025 by corneliusroemer • Draft
2 tasks
7
[pre-commit.ci] pre-commit autoupdate
#309 opened Mar 24, 2025 by pre-commit-ci bot Loading…
Remove reverse column, associated script, and references
#210 opened Oct 13, 2023 by joverlee521 • Draft
1 task
1
ProTip! Updated in the last three days: updated:>2025-10-22.