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3.15.0

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@nextstrain-bot nextstrain-bot released this 11 Jun 07:12

3.15.0

Nextclade Web: fix country colorings in output tree json #1646

Colors for "country", "region" and "division" are now correctly displayed in tree view

CDS coverage #1514

Nextclade now calculates amino acid coverage of each CDS. You can find this information:

  • in output files: in the column or field cdsCoverage
  • in Nextclade Web: in the tooltip of the "Cov." column on "Results" page

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

  • 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
  • 🐋 Docker images are available on DockerHub
  • 🐍 Conda package is available in bioconda channel.

⌨️ Source code is on GitHub: github.com/nextstrain/nextclade

🚩 Report bugs, suggest features by submitting a GitHub issue

💾 Nextclade datasets are here