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3.15.2

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@nextstrain-bot nextstrain-bot released this 02 Jul 04:45
3.15.2
6ad6458

3.15.2

fix: calculate phenotypes even if there's no tree

Nextclade now calculates and displays phenotype data even for datasets which have no reference tree. The clade ignoring feature does not apply for such datasets (because no clade assignment is possible without a tree).

fix: collapse -0.0 to 0.0 in phenotype values

Nextclade will no longer display or output negative zeroes in phenotype data.

fix: ensure CSV column and category selection is additive

Nextclade now correctly adds all entries together, when mixing individual columns and column categories in CSV and TSV output columns selection configuration (e.g. in --output-columns-selection CLI argument). Previously one would incorrectly overwrite the other.

fix: ensure canonical order of CSV columns

Order of columns in CSV and TSV is now always enforced to be the same, regardless of presence or absence of certain columns.

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

  • 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
  • 🐋 Docker images are available on DockerHub
  • 🐍 Conda package is available in bioconda channel.

⌨️ Source code is on GitHub: github.com/nextstrain/nextclade

🚩 Report bugs, suggest features by submitting a GitHub issue

💾 Nextclade datasets are here
Assets 9
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