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3.17.0

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@nextstrain-bot nextstrain-bot released this 09 Sep 12:08
3.17.0
1b8c0a9

3.17.0

Add trailing semicolon to Newick format output

Newick format output now includes a trailing semicolon for better compatibility with parsers.

Remove extra quotation marks around filepaths

Nextclade would erroneously add double quotation marks when printing paths. This has been fixed.

Add more JSON schema definitions

We have added JSON schema definitions for Dataset and DatasetCollection types, both are parts of the DatasetIndexJson. You can find the latest definitions and documentation here

Add $schema field to JSON outputs

We have added an optional $schema field to JSON input and output files. This is a convention used to indicate which JSON schema definition the output conforms to. This can be useful for validation and for tooling that supports JSON schema (e.g. autocomplete and documentation in VSCode when editing pathogen.json file).

Installation and usage

📚 Documentation: docs.nextstrain.org/projects/nextclade

🌍 Nextclade Web: clades.nextstrain.org

🖥️ Nextclade CLI:

  • 📥 Standalone native executables can be downloaded using the links in the "Assets" section just below. Mind the different operating systems and computer architectures.
  • 🐋 Docker images are available on DockerHub
  • 🐍 Conda package is available in bioconda channel.

⌨️ Source code is on GitHub: github.com/nextstrain/nextclade

🚩 Report bugs, suggest features by submitting a GitHub issue

💾 Nextclade datasets are here
Assets 9
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