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Pull requests: nf-core/rnaseq

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Pull requests list

feat: Add support for uncompressed FASTQ input files
#1686 opened Jan 28, 2026 by pinin4fjords • Draft
3 tasks
1
Add GPU accelerated STAR and Markdups (using Parabricks rna_fq2bam)
#1685 opened Jan 26, 2026 by gburnett-nvidia Loading…
11 tasks
1
5
chore: Update nf-schema to 2.6.1 for strict syntax compatibility
#1680 opened Jan 23, 2026 by pinin4fjords Loading…
1 of 2 tasks
2
feat: Implement Nextflow workflow outputs syntax (breaking change)
#1679 opened Jan 21, 2026 by pinin4fjords • Draft
3 tasks
3
Dupradar fast mode with Python/featureCounts implementation
#1674 opened Jan 5, 2026 by edmundmiller • Draft
@edmundmiller
3
Qc optimization
#1601 opened Aug 22, 2025 by edmundmiller Loading…
11 tasks
@edmundmiller
4
Correct typos in rnaseq DE analysis docs
#1569 opened Jun 10, 2025 by johnvusich Loading…
2 tasks done
1
ARM Megatests
#1529 opened Mar 26, 2025 by edmundmiller Loading…
@edmundmiller
12
Container configs
#1515 opened Mar 17, 2025 by edmundmiller Loading…
@edmundmiller
15
Try matthias' fix to download
#1439 opened Oct 23, 2024 by pinin4fjords • Draft
11 tasks
2
allow integer sample names
#1421 opened Oct 18, 2024 by idot Loading…
1 task
8
Update nextflow_schema.json
#1397 opened Oct 2, 2024 by rraadd88 Loading…
1 of 11 tasks
2
Copy optimized resources from Tower
#1209 opened Feb 6, 2024 by edmundmiller • Draft
@edmundmiller
4
Add NGSCheckMate Ready for review
#993 opened Mar 31, 2023 by SPPearce Loading…
6 of 9 tasks
9
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