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515: Fix bug processing singleplex flex data#517

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tgelafr-pfzr merged 1 commit intonf-core:devfrom
tgelafr-pfzr:bug/515-singleplex-flex-bug
Jan 20, 2026
Merged

515: Fix bug processing singleplex flex data#517
tgelafr-pfzr merged 1 commit intonf-core:devfrom
tgelafr-pfzr:bug/515-singleplex-flex-bug

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@tgelafr-pfzr tgelafr-pfzr commented Jan 20, 2026

This closes #515, in which singleplex flex data could not be processed because the probe barcode file was not passed. The cellranger multi module is updated to include the fix implemented in: nf-core/modules#9652

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • CHANGELOG.md is updated.

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@tgelafr-pfzr tgelafr-pfzr merged commit f890639 into nf-core:dev Jan 20, 2026
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@tgelafr-pfzr tgelafr-pfzr deleted the bug/515-singleplex-flex-bug branch January 20, 2026 17:33
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Singleplex Flex data cannot be processed because probeset file is not added to config

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