rtcog

This project contains the code to perform realtime fMRI experiments in the following form:

1. The system monitors brain activity on a TR-by-TR basis
2. If the subject brain looks like one of a subset of templates, then the program fires a survey
3. The program continues monitoring the brain in the background.

Documentation can be found at https://rtcog.readthedocs.io.

Installation

1. Clone the Repository

git clone https://github.com/nimh-sfim/rtcog.git
cd rtcog

2. Install dependencies

Prerequisites

• portaudio
• afni (version AFNI_25.0.07)

Create environment

conda env create -f env.yml

conda activate rtcog
pip install . # or `pip install -e .` for editable mode