Issues

• Publish the notebooks as part of the documentation

  documentation
  nipreps/nifreeze#493 · Filter by author jhlegarreta opened on Sep 14, 2026
  1

• Refactor parallelization backend

  enhancement
  nipreps/nifreeze#478 · Filter by author jhlegarreta opened on Aug 5, 2026

• Confirm an explicit white kernel is not necessary for multi-shell GPR

  nipreps/nifreeze#459 · Filter by author oesteban opened on Jul 14, 2026

• Reduce overlap between the design and CLAUDE instruction documentation

  documentation
  Task

  nipreps/nifreeze#435 · Filter by author jhlegarreta opened on Mar 21, 2026

• Simulated, motion-free PET dataset

  nipreps/nifreeze#396 · Filter by author oesteban opened on Jan 2, 2026
  

• Our HDF5 implementation continues to be a memory hog

  bug
  nipreps/nifreeze#347 · Filter by author oesteban opened on Nov 24, 2025

• Revise and exercise DWI.to_nifti

  nipreps/nifreeze#341 · Filter by author oesteban opened on Nov 23, 2025
  1

• Add test to avoid regressions on ants module settings overriding

  nipreps/nifreeze#333 · Filter by author jhlegarreta opened on Nov 20, 2025

• max_b attribute not used

  enhancement
  nipreps/nifreeze#314 · Filter by author jhlegarreta opened on Nov 8, 2025

• Generalize the motion_data fixture to any modality

  enhancement
  nipreps/nifreeze#209 · Filter by author jhlegarreta opened on Aug 13, 2025

• Increase consistency across notebooks

  enhancement
  nipreps/nifreeze#198 · Filter by author jhlegarreta opened on Aug 2, 2025

• Adopt a logger

  enhancement
  nipreps/nifreeze#193 · Filter by author jhlegarreta opened on Jul 26, 2025

• Enable to_nifti() to generate a split version of the series with motion encoded in q-form (or s-form)

  nipreps/nifreeze#172 · Filter by author oesteban opened on Jul 16, 2025
  1

• Feature: use backend HDF5 data structure as a checkpointing framework

  nipreps/nifreeze#171 · Filter by author oesteban opened on Jul 16, 2025

• Design issues of parallelization

  bug
  nipreps/nifreeze#158 · Filter by author oesteban opened on Jun 8, 2025

• Add model and problem semantics to CLI

  effort: mediumenhancementimpact: high
  Feature

  nipreps/nifreeze#156 · Filter by author jhlegarreta opened on Jun 7, 2025

• Increase consistency in brain mask parameter naming

  documentationeffort: lowgood first issue
  nipreps/nifreeze#132 · Filter by author jhlegarreta opened on May 20, 2025

• Make exception handling specific in tests

  effort: mediumimpact: medium
  Task

  nipreps/nifreeze#118 · Filter by author jhlegarreta opened on May 8, 2025

• Clean up testing data and streamline downloading it across GHA workflows

  effort: mediumimpact: medium
  Task

  nipreps/nifreeze#112 · Filter by author jhlegarreta opened on May 4, 2025
  1

• Notebooks not being run in CI or not reporting errors

  enhancement
  Bug

  nipreps/nifreeze#95 · Filter by author jhlegarreta opened on May 1, 2025
  7

  

• CoverageWarning in tests

  bug
  nipreps/nifreeze#76 · Filter by author jhlegarreta opened on Jan 26, 2025

• Imposing boundaries on b-values (maximum, minimum) should be done by dataset (not model)

  nipreps/nifreeze#65 · Filter by author oesteban opened on Jan 23, 2025
  2

• Move detrending from AverageModel to its own Filter

  nipreps/nifreeze#63 · Filter by author oesteban opened on Jan 22, 2025

• Improve benchmarking

  enhancement
  nipreps/nifreeze#61 · Filter by author jhlegarreta opened on Jan 20, 2025

• Set a cron job to run extended testing

  enhancement
  nipreps/nifreeze#60 · Filter by author jhlegarreta opened on Jan 20, 2025
  1