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adding names to shiny app data #14

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adding names to shiny app data #14

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7517a91
adding names to shiny app data
cebarboza Nov 21, 2023
029a4bf
update version description
cebarboza Nov 21, 2023
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: EhdenAlopecia
Title: Analytic software to perform large-scale distributed analysis of patients with Alopecia as part of the EHDEN study-athon
Version: 1.2.2
Version: 1.2.3
Authors@R: person("Ross", "Williams", , "r.williams@derasmusmc.nl", role = c("aut", "cre"))
Description: This package creates the cohorts for this EHDEN Alopecia study study. Based on this cohort diagnostics, incidence and prevalence rates and treatment patterns are analysis are performed.
License: Apache License (>= 2)
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9 changes: 9 additions & 0 deletions R/runShinyAlopecia.R
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Expand Up @@ -58,6 +58,15 @@ runShinyAlopecia <- function(resultsFolder = here::here("results")) {
targetCohort = targetCohortNumber[v]))
}
}
cohortNames <- read_csv(system.file("cohortDefinitionSet.csv", package = "EhdenAlopecia"),
show_col_types = FALSE,
col_names = TRUE)

resultsPathways <- resultsPathways %>%
mutate(path = ifelse(path %in% cohortNames$cohortId, cohortNames$cohortName[match(path, cohortNames$cohortId)], path),
targetCohort = ifelse(targetCohort %in% cohortNames$cohortId, cohortNames$cohortName[match(targetCohort, cohortNames$cohortId)], targetCohort))


return(resultsPathways)
})

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