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olaflaitinen/README.md
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Chief Technology Officer & Co-Founder | Postdoctoral Research Fellow | ERC Seconded National Expert
Specializing in Medical AI, Clinical Genomics, Explainable AI, Federated Learning, and Multi-Omics Integration

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Location: Greater Linköping Metropolitan Area, Sweden
Address: Fårsaxvägen 31, 586 66 Linköping
Phone: +46 76 236 80 88 | Email: [email protected]


Professional Summary

As a Postdoctoral Research Fellow, Chief Technology Officer, and Research Scientist, I advance interdisciplinary research at the convergence of artificial intelligence, computational biology, and translational medicine. My research program focuses on developing explainable, ethically-grounded AI systems that demonstrably enhance clinical decision-making and patient outcomes while ensuring algorithmic transparency and regulatory compliance.

Current Academic & Professional Appointments:

  • Chief Technology Officer & Co-Founder — Skolyn AB (AI-Driven Clinical Decision Support Platform)
  • Seconded National Expert — European Research Council Executive Agency (Research Policy & Impact Assessment)
  • Postdoctoral Research Fellow — Uppsala University, Division of Visual Information and Interaction (Medical Imaging & XAI)
  • Clinical Bioinformatician — Linköping University Hospital (Rare Disease Genomics & Precision Medicine)
  • Research Scientist — Google Health AI (Safety & Efficacy Evaluation of Generative Health Agents)
  • Data Science Research Associate — Technical University of Denmark, Department of Bioengineering (Proteomics & Systems Biology)

Currently pursuing dual doctoral degrees in Systems & Molecular Biomedicine (University of Luxembourg) and Human-XAI Collaboration (Technical University of Denmark), complementing my MSc in Statistics & Machine Learning (Linköping University) and BSc in Computing & Electrical Engineering (Tampere University). This interdisciplinary foundation enables bridging technical innovation with clinical translation and evidence-based policy development.

Quick Stats

  • 6+ Publications
  • 2 PhDs (ongoing)
  • 40+ Certifications
  • €3M+ Grants Secured
  • 15+ Teams Led
  • 50+ Projects
  • 500+ Clinical Cases
  • 2TB+ Data Processed

GitHub Statistics



Current Positions

Chief Technology Officer (CTO) & Co-Founder - Skolyn

January 2025 - Present | Baku Economic Zone, Azerbaijan

As CTO and Co-Founder of Skolyn, I lead the technology strategy and R&D for our mission: eliminating diagnostic error through explainable clinical AI. Our platform serves as a "Clinical Co-Pilot," combining multimodal medical imaging with transparent reasoning.

Key Achievements:

  • Architected Skolyn AI Platform processing 127+ pathological indicators in <3 seconds
  • Achieved >95% diagnostic accuracy with full XAI interpretability
  • Scaled to 50,000+ scans across Nordic and DACH hospital pilots
  • Delivered <8% churn, 85% gross margins, and strong expansion revenue
  • Implemented GDPR/HIPAA-compliant federated learning pipelines
  • Led toward CE Mark, ISO 13485, and FDA 510(k) readiness
  • Positioned for $2M Seed round and forthcoming Series A

Technical Leadership:

  • Directed team of ML engineers, backend developers, and clinical data scientists
  • Integrated HL7/FHIR data pipelines with enterprise-grade APIs
  • Deployed distributed inference systems (X-ray, CT, MRI modalities)
  • Built privacy-preserving training infrastructure

Seconded National Expert - European Research Council (ERC)

November 2025 - Present | Brussels Metropolitan Area

As a Seconded National Expert at the European Research Council Executive Agency (ERCEA), I focus on evidence-based policy development and strategic evaluation of Horizon Europe's €16B research portfolio.

Key Responsibilities:

  • Analyze 12,000+ ERC projects, 75,000+ researchers, 200,000+ publications
  • Develop ML-based evaluation workflows for research impact assessment
  • Prepare policy briefs translating complex data into actionable insights
  • Coordinate initiatives on gender equality, open science, early-career researcher participation
  • Support ERC Scientific Council and European Commission decision-making

Technical Expertise:

  • Advanced statistical modeling and bibliometric network analysis
  • Machine learning for research evaluation and impact prediction
  • Data governance and strategic foresight for EU research policy

Postdoctoral Researcher - Uppsala University

July 2025 - Present | Greater Uppsala Metropolitan Area

At Uppsala University's Division of Visual Information and Interaction (Vi3), I lead research in medical imaging, computer vision, and explainable AI for neuroradiology.

Research Highlights:

  • Developed 3+ image processing pipelines for MRI analysis
  • Reduced manual annotation effort by 25-30%
  • Achieved >95% AUC for neurodegenerative biomarker detection
  • Led federated learning benchmark across 5 Swedish hospitals (>0.9 accuracy under GDPR)
  • Submitted 2 manuscripts (Medical Image Analysis, NeuroImage)
  • Presented at MICCAI 2025, ECR 2026, Nordic AI in Medicine Summit
  • Mentor 2 PhD candidates in deep learning for brain tumor detection

Technical Stack:

  • 3D CNNs and transformer architectures
  • Explainable AI (SHAP, Integrated Gradients, Captum)
  • Multi-institutional data harmonization
  • Privacy-preserving AI workflows

Education

Doctor of Philosophy (PhD)

University of Luxembourg
Systems and Molecular Biomedicine
February 2025 - January 2028
GPA: 4.0/4.0 | Merit Scholarship

Thesis: "Integrative Network Analysis of Transcriptomic and Proteomic Data to Uncover Dysregulated Signaling Cascades in Early-Stage Neurodegeneration"

Focus:

  • Computational biology & molecular modeling
  • Multi-omics integration
  • Gene regulatory networks
  • AI-driven precision medicine

Doctor of Philosophy (PhD)

DTU - Technical University of Denmark
Human-XAI Collaboration
April 2025 - March 2028
GPA: 4.0/4.0 | Research Excellence Award

Thesis: "Designing Adaptive Human-AI Systems for Collaborative Problem Solving in Fetal Ultrasound Imaging"

Focus:

  • Explainable AI for medical imaging
  • Human-in-the-loop evaluation
  • Clinical decision support systems
  • Usability testing & human-centered design

Master of Science (MSc)

Linköping University
Statistics and Machine Learning
August 2024 - June 2026
GPA: 3.95/4.0 | Excellence Scholarship

Thesis: "Application of Explainable AI for Predictive Diagnostics in Oncology using Clinical Data"

Coursework:

  • Advanced Statistical Theory
  • Probabilistic Modeling
  • Deep Learning & NLP
  • Bayesian Networks
  • Time Series Analysis

Bachelor of Science (BSc)

Tampere University
Computing and Electrical Engineering
August 2021 - June 2024
GPA: 3.9/4.0 | President's Medal '24

Thesis: "SecureSense: Design of Wireless Sensor Network for Intelligent Safety Applications"

Key Projects:

  • Project RoboNav: Autonomous Mobile Robot Navigation
  • FFT Algorithm Benchmarking (Research Assistant)
  • Embedded Systems & Signal Processing

International Baccalaureate (IB)

International School of Helsinki
July 2019 - June 2021
Score: 40/45 (Top 6% Cohort) | Academic Excellence in STEM

Higher Level: Mathematics, Biology, English
Extended Essay: "Modeling Population Dynamics via Differential Equations"
Leadership: Founded ISH STEM Mentorship Programme, MUN, Debate Society, AI Research Group


Technical Expertise

Programming Languages

Python R SQL C++ Bash Java JavaScript MATLAB

AI & Machine Learning

TensorFlow PyTorch Keras scikit-learn HuggingFace OpenCV CUDA JAX

Bioinformatics & Computational Biology

Nextflow Bioconductor AlphaFold Biopython Scanpy GATK

Cloud & MLOps

GCP AWS Azure Docker Kubernetes Terraform MLflow Airflow

Databases & Data Engineering

PostgreSQL MongoDB Redis Spark Snowflake

Development Tools & Frameworks

Git GitHub VS_Code Jupyter FastAPI Flask

Comprehensive Tech Stack




Technical Skills Chart

Languages & Programming Proficiency

Code Statistics



Spoken Languages

Language Proficiency Level
Finnish Native or Bilingual 100%
Azerbaijani Native or Bilingual 100%
English Full Professional 95%
Swedish Full Professional 95%
Danish Professional Working 85%
Turkish Professional Working 85%
French Professional Working 75%
German Limited Working 60%
Norwegian Limited Working 60%


Featured Projects

Medical AI & Healthcare

Career Timeline



Impact Metrics

Skolyn Clinical Co-Pilot

Enterprise AI Platform

Multimodal medical imaging analysis with XAI

  • Tech: PyTorch, HL7/FHIR, Kubernetes
  • Impact: 127+ indicators in <3s
  • Scale: 50K+ scans processed
  • Accuracy: >95% diagnostic rate

XAI for Fetal Ultrasound

Published Research

Explainable AI framework for biometry prediction

  • Tech: PyTorch, SHAP, Captum, DICOM
  • Impact: 25% increase in diagnostic confidence
  • Publication: Ultrasound in O&G 2025
  • Citation: DOI: 10.1002/uog.24589

GenAI Health Agent Eval

Google Health AI

Large-scale safety evaluation framework

  • Tech: TensorFlow, Human-in-the-Loop
  • Impact: 20% decrease in failure modes
  • Scale: >1M interactions analyzed
  • Publication: JAMIA (forthcoming)

Federated Learning for Hospitals

Privacy-Preserving AI

Multi-institutional collaborative training

  • Tech: PySyft, Flower, PyTorch
  • Impact: GDPR-compliant research
  • Scale: 5 hospitals, >10K patients
  • Accuracy: >0.9 across sites

Multi-Omics Network Integrator

Neurodegeneration Research

Integration of transcriptomic & proteomic data

  • Tech: Python, NetworkX, Scanpy, R
  • Impact: 15+ novel biomarkers
  • Scale: 2,000+ samples
  • Improvement: AUC 0.87 to 0.94

3D Brain Tumor Segmentation

Neuroradiology Pipeline

Automated MRI segmentation with 3D U-Net

  • Tech: PyTorch, NiBabel, ITK
  • Impact: 25% decrease in manual workload
  • Accuracy: 95%+ Dice coefficient
  • Dataset: Multi-terabyte MRI scans

Publications & Research Output

Peer-Reviewed Publications

  1. Imanov, O. Y. L., Chen, J., & Sharma, R. (Forthcoming). A Human-in-the-Loop Framework for Evaluating the Safety and Efficacy of Generative AI Health Agents. Journal of the American Medical Informatics Association (JAMIA).

  2. Imanov, O. Y. L., & Nielsen, M. B. (2025). Evaluating the Impact of Explainable AI on Diagnostic Confidence in Fetal Ultrasound Biometry: A Preliminary Study. Ultrasound in Obstetrics & Gynecology. DOI: 10.1002/uog.24589

  3. Jensen, L., Rasmussen, S., & Imanov, O. Y. L. (2025). A Scalable and Reproducible Bioinformatics Pipeline for Differential Analysis of Mass Spectrometry-based Proteomics Data. Journal of Proteome Research, 24(2), 112-125. DOI: 10.1021/acs.jproteome.4c00123

  4. Laitinen Imanov, O. Y., & Virtanen, A. (2024). Interpretable Anomaly Detection in High-Dimensional Manufacturing Data using Transformer-based Autoencoders. IEEE Transactions on Industrial Informatics, 20(4), 3145-3154. DOI: 10.1109/TII.2023.1234567

  5. Schmidt, K., Imanov, O. Y. L., & Schneider, I. (2024). Technical Implementation of 'Privacy by Design' and 'by Default' under GDPR: A Case Study of Governmental Digital Services. Proceedings on Privacy Enhancing Technologies (PoPETs), 2024(3), 45-62. DOI: 10.56553/popets-2024-0071

Book Chapters & Conference Papers

Book Chapters

  • Imanov, O. Y. L., & Kumar, S. (2025). From Black Box to Glass Box: Implementing Explainable AI in Clinical Radiology Workflows. In A. Gupta & L. Wang (Eds.), Artificial Intelligence in Medical Diagnostics: A Practical Guide (pp. 145-168). Springer Nature.
  • Imanov, O. Y. L. (2024). Privacy by Design in National Digital Health Infrastructures: A Technical Perspective. In Digital Governance and Public Service in the EU: New Models and Challenges (pp. 88-105). Luxembourg: Publications Office of the European Union.

Conference Presentations

  • MICCAI 2025 - "Federated Learning for Multi-Institutional Brain Tumor Segmentation"
  • ECR 2026 - "Explainable AI in Neuroradiology: Clinical Validation Study"
  • Nordic AI in Medicine Summit 2025 - "Privacy-Preserving AI in Swedish Healthcare"
  • EuPA 2025 - "ML-based Biomarker Discovery in Proteomics Data"

Certifications & Professional Development

Professional Certifications (40+)

Cloud & MLOps (12 Certifications)

Google Cloud Platform

  • Google Cloud Professional Machine Learning Engineer
  • Google Cloud Professional Data Engineer
  • Google Cloud Professional Cloud Architect
  • Google Cloud Professional DevOps Engineer
  • Google Cloud Professional Security Engineer

Amazon Web Services

  • AWS Certified Machine Learning - Specialty
  • AWS Certified Solutions Architect - Professional
  • AWS Certified DevOps Engineer - Professional

Microsoft Azure

  • Microsoft Certified: Azure AI Engineer Associate
  • Microsoft Certified: DevOps Engineer Expert

Container Orchestration

  • Certified Kubernetes Administrator (CKA)
  • Certified Kubernetes Application Developer (CKAD)

AI & Machine Learning (10+ Certifications)

  • Deep Learning Specialization (DeepLearning.AI)
  • Natural Language Processing Specialization (DeepLearning.AI)
  • Computer Vision Specialization (Vanderbilt University)
  • Reinforcement Learning Specialization (University of Alberta)
  • TensorFlow Developer Professional Certificate
  • XAI: Explainable Artificial Intelligence (H2O.ai)
  • GANs Specialization (DeepLearning.AI)
  • Probabilistic Graphical Models (Stanford)

Bioinformatics & Genomics (8 Certifications)

  • Genomic Data Science Specialization (Johns Hopkins)
  • Bioinformatics Specialization (UC San Diego)
  • Single-Cell RNA-Seq Analysis (Wellcome Sanger Institute)
  • NextFlow & nf-core for Reproducible Workflows
  • Proteomics: Methods and Applications in Medicine (KAIST)
  • AlphaFold & Protein Structure Prediction (EMBL-EBI)
  • QIIME 2 for Microbiome Analysis
  • FAIR Data Principles for Life Sciences

Security & Privacy (6 Certifications)

  • Certified Information Systems Security Professional (CISSP)
  • Certified Information Privacy Professional/Europe (CIPP/E)
  • Certified Information Privacy Manager (CIPM)
  • Certified Ethical Hacker (CEH)
  • CompTIA Security+
  • GDPR Practitioner Certificate

Core Competencies

mindmap
  root((Olaf Yunus<br/>Laitinen-Imanov))
    Medical AI
      Explainable AI
        SHAP
        LIME
        Integrated Gradients
        Captum
      Medical Imaging
        Neuroradiology
        Ultrasound
        Multi-modal Fusion
      Clinical Decision Support
        Diagnostic Assistance
        Risk Prediction
        Treatment Planning
    Bioinformatics
      Clinical Genomics
        Variant Calling
        WGS/WES Analysis
        Rare Disease Diagnostics
      Proteomics
        Mass Spectrometry
        Differential Analysis
        Biomarker Discovery
      Multi-Omics
        Data Integration
        Network Analysis
        Systems Biology
    Technology Leadership
      Product Strategy
        Roadmap Planning
        Market Analysis
        User Research
      Team Management
        ML Engineers
        Data Scientists
        Clinical Experts
      Fundraising
        Pitch Development
        Investor Relations
        Grant Writing
    Research & Policy
      European Research
        ERC Evaluation
        Policy Analysis
        Impact Assessment
      Science Policy
        Evidence-based Policy
        Research Evaluation
        Strategic Foresight
      Publications
        Peer Review
        Scientific Writing
        Conference Presentations
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Achievements & Impact

Category Metrics
Funding Secured €3M+ in research grants (ERC, DFF, FCAI, Business Finland)
Publications 6+ peer-reviewed papers + 2 book chapters
Awards DTU Fellowship, President's Medal, Google Peer Bonus, FCAI Spotlight
Leadership Led 15+ engineers, mentored 10+ students, supervised 2 PhDs
Clinical Impact 500+ patient cases analyzed, 50K+ scans processed
Data Scale 2+ TB genomic data, 10+ TB proteomics, multi-TB imaging
Accuracy >95% diagnostic accuracy, >0.9 federated learning performance
Efficiency 25-30% reduction in manual workload, 20% faster pipelines

Teaching & Mentorship

Role Institution Courses & Activities
Adjunct Instructor Linköping University TAMS11 Probability & Statistics
TAMS17 Statistical Theory
TAMS39 Multivariate Methods
TDDE15 Data Analysis with Python
150+ students per semester
PhD Supervisor Uppsala University Mentoring 2 PhD candidates in deep learning for medical imaging
Research Mentor FCAI Guiding junior researchers on RL & computer vision projects
Thesis Advisor Linköping University Co-supervised MSc thesis on XAI applications

Pedagogical Contributions & Innovation:

  • Developed 25+ interactive Jupyter Notebook modules incorporating authentic biomedical datasets for experiential learning
  • Pioneered integration of Explainable AI methodologies into machine learning curriculum, emphasizing interpretability and ethical considerations
  • Achieved consistently high student evaluations (>90% satisfaction) across theoretical and applied courses
  • Recognized with nomination for Faculty Excellence in Teaching Award (2025) for innovative pedagogical approaches

Community & Leadership

Kaggle

Vice President
Kaggle Türkiye Topluluğu
2025 - Present

UN

Volunteer
United Nations Volunteers
2023 - Present

Red Cross

Volunteer
Finnish & Austrian Red Cross
2024 - Present

Scouts

Scout
Scouts of Azerbaijan
2022 - Present


Contribution Activity


Get in Touch

Collaboration Interests & Professional Engagement

Research Collaborations: Interdisciplinary projects in medical AI, explainable machine learning, federated learning architectures, and multi-omics integration
Strategic Advisory: Consulting engagements for HealthTech ventures, AI product strategy, regulatory compliance (MDR/IVDR, FDA), and clinical validation studies
Academic Partnerships: Joint PhD/postdoctoral supervision, collaborative grant applications (H2020, Horizon Europe, NIH, NSF), and co-authored publications
Policy & Governance: Evidence-based policy development for European research frameworks, AI ethics committees, and healthcare technology assessment
Open-Source Development: Contributions to bioinformatics pipelines, ML infrastructure, reproducible research frameworks, and FAIR data initiatives


LinkedIn Email Google Scholar ORCID



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Last updated: November 2025 | November 2025 | November 2025 | November 2025 | November 2025 | November 2025 | November 2025 | December 2025 | Curriculum Vitae available upon request | ORCID: 0009-0006-5184-0810

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  1. medical_imaging_fairness medical_imaging_fairness Public

    Ethnic bias analysis in medical imaging AI: Demonstrating that explainable-by-design models achieve 80% bias reduction across 5 ethnic groups (50k images)

    Python 5