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Extend benchmark #45

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cb404e9
Extend benchmark
imallona Dec 12, 2025
cef7c58
Missed a UCI
imallona Dec 12, 2025
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48 changes: 24 additions & 24 deletions Clustering_conda.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -51,8 +51,8 @@ stages:
# - values: ["--dataset_generator", "fcps", "--dataset_name", "tetra"] # 4 1
# - values: ["--dataset_generator", "fcps", "--dataset_name", "twodiamonds"] # 2 1
# - values: ["--dataset_generator", "fcps", "--dataset_name", "wingnut"] # 2 1
# - values: ["--dataset_generator", "graves", "--dataset_name", "dense"] # 2 1
# - values: ["--dataset_generator", "graves", "--dataset_name", "fuzzyx"] # 2, 4, 5 6
- values: ["--dataset_generator", "graves", "--dataset_name", "dense"] # 2 1
- values: ["--dataset_generator", "graves", "--dataset_name", "fuzzyx"] # 2, 4, 5 6
# - values: ["--dataset_generator", "graves", "--dataset_name", "line"] # 2 1
# - values: ["--dataset_generator", "graves", "--dataset_name", "parabolic"] # 2, 4 2
# - values: ["--dataset_generator", "graves", "--dataset_name", "ring"] # 2 1
Expand All @@ -61,29 +61,29 @@ stages:
# - values: ["--dataset_generator", "graves", "--dataset_name", "zigzag"] # 3, 5 2
# - values: ["--dataset_generator", "graves", "--dataset_name", "zigzag_noisy"] # 3, 5 2
# - values: ["--dataset_generator", "graves", "--dataset_name", "zigzag_outliers"] # 3, 5 2
# - values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t4_8k"] # 6 1
# - values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t5_8k"] # 6 1
- values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t4_8k"] # 6 1
- values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t5_8k"] # 6 1
# - values: ["--dataset_generator", "other", "--dataset_name", "hdbscan"] # 6 1
# - values: ["--dataset_generator", "other", "--dataset_name", "iris"] # 3 1
# - values: ["--dataset_generator", "other", "--dataset_name", "iris5"] # 3 1
# - values: ["--dataset_generator", "other", "--dataset_name", "square"] # 2 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "aggregation"] # 7 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "compound"] # 4, 5, 6 5
- values: ["--dataset_generator", "sipu", "--dataset_name", "aggregation"] # 7 1
- values: ["--dataset_generator", "sipu", "--dataset_name", "compound"] # 4, 5, 6 5
# - values: ["--dataset_generator", "sipu", "--dataset_name", "flame"] # 2 2
# - values: ["--dataset_generator", "sipu", "--dataset_name", "jain"] # 2 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "pathbased"] # 3, 4 2
# - values: ["--dataset_generator", "sipu", "--dataset_name", "r15"] # 8, 9, 15 3
# - values: ["--dataset_generator", "sipu", "--dataset_name", "spiral"] # 3 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "unbalance"] # 8 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "ecoli"] # 8 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "ionosphere"] # 2 1
- values: ["--dataset_generator", "uci", "--dataset_name", "ecoli"] # 8 1
- values: ["--dataset_generator", "uci", "--dataset_name", "ionosphere"] # 2 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "sonar"] # 2 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "statlog"] # 7 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "wdbc"] # 2 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "wine"] # 3 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "yeast"] # 10 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "circles"] # 4 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "cross"] # 4 1
- values: ["--dataset_generator", "wut", "--dataset_name", "circles"] # 4 1
- values: ["--dataset_generator", "wut", "--dataset_name", "cross"] # 4 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "graph"] # 10 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "isolation"] # 3 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "labirynth"] # 6 1
Expand Down Expand Up @@ -123,7 +123,7 @@ stages:
commit: "45e43d3"
parameters:
- values: ["--linkage", "complete"]
# - values: ["--linkage", "ward"]
- values: ["--linkage", "ward"]
# - values: ["--linkage", "average"]
# - values: ["--linkage", "weighted"]
# - values: ["--linkage", "median"]
Expand All @@ -137,7 +137,7 @@ stages:
commit: 5877378
parameters:
- values: ["--method", "birch"]
# - values: ["--method", "kmeans"]
- values: ["--method", "kmeans"]
# - values: ["--method", "spectral"] ## too slow
# - values: ["--method", "gm"]
- id: agglomerative
Expand All @@ -148,7 +148,7 @@ stages:
commit: 5454368
parameters:
- values: ["--linkage", "average"]
# - values: ["--linkage", "complete"]
- values: ["--linkage", "complete"]
# - values: ["--linkage", "ward"]
- id: genieclust
name: "genieclust"
Expand All @@ -158,7 +158,7 @@ stages:
commit: 6090043
parameters:
- values: ["--method", "genie", "--gini_threshold", 0.5]
# - values: ["--method", "gic"]
- values: ["--method", "gic"]
# - values: ["--method", "ica"]
- id: fcps
name: "fcps"
Expand All @@ -169,7 +169,7 @@ stages:
parameters:
# - values: ["--method", "FCPS_AdaptiveDensityPeak"] # not in Conda
- values: ["--method", "FCPS_Minimax", "--seed", 2]
# - values: ["--method", "FCPS_MinEnergy", "--seed", 2]
- values: ["--method", "FCPS_MinEnergy", "--seed", 2]
# - values: ["--method", "FCPS_HDBSCAN_2", "--seed", 2]
# - values: ["--method", "FCPS_HDBSCAN_4", "--seed", 2]
# - values: ["--method", "FCPS_HDBSCAN_8", "--seed", 2]
Expand Down Expand Up @@ -198,15 +198,15 @@ stages:
parameters:
- values: ["--metric", "normalized_clustering_accuracy"]
- values: ["--metric", "adjusted_fm_score"]
# - values: ["--metric", "adjusted_mi_score"]
# - values: ["--metric", "adjusted_rand_score"]
# - values: ["--metric", "fm_score"]
# - values: ["--metric", "mi_score"]
# - values: ["--metric", "normalized_clustering_accuracy"]
# - values: ["--metric", "normalized_mi_score"]
# - values: ["--metric", "normalized_pivoted_accuracy"]
# - values: ["--metric", "pair_sets_index"]
# - values: ["--metric", "rand_score"]
- values: ["--metric", "adjusted_mi_score"]
- values: ["--metric", "adjusted_rand_score"]
- values: ["--metric", "fm_score"]
- values: ["--metric", "mi_score"]
- values: ["--metric", "normalized_clustering_accuracy"]
- values: ["--metric", "normalized_mi_score"]
- values: ["--metric", "normalized_pivoted_accuracy"]
- values: ["--metric", "pair_sets_index"]
- values: ["--metric", "rand_score"]
inputs:
- entries:
- clustering.predicted_ks_range
Expand Down
48 changes: 24 additions & 24 deletions Clustering_envmodules.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -51,8 +51,8 @@ stages:
# - values: ["--dataset_generator", "fcps", "--dataset_name", "tetra"] # 4 1
# - values: ["--dataset_generator", "fcps", "--dataset_name", "twodiamonds"] # 2 1
# - values: ["--dataset_generator", "fcps", "--dataset_name", "wingnut"] # 2 1
# - values: ["--dataset_generator", "graves", "--dataset_name", "dense"] # 2 1
# - values: ["--dataset_generator", "graves", "--dataset_name", "fuzzyx"] # 2, 4, 5 6
- values: ["--dataset_generator", "graves", "--dataset_name", "dense"] # 2 1
- values: ["--dataset_generator", "graves", "--dataset_name", "fuzzyx"] # 2, 4, 5 6
# - values: ["--dataset_generator", "graves", "--dataset_name", "line"] # 2 1
# - values: ["--dataset_generator", "graves", "--dataset_name", "parabolic"] # 2, 4 2
# - values: ["--dataset_generator", "graves", "--dataset_name", "ring"] # 2 1
Expand All @@ -61,29 +61,29 @@ stages:
# - values: ["--dataset_generator", "graves", "--dataset_name", "zigzag"] # 3, 5 2
# - values: ["--dataset_generator", "graves", "--dataset_name", "zigzag_noisy"] # 3, 5 2
# - values: ["--dataset_generator", "graves", "--dataset_name", "zigzag_outliers"] # 3, 5 2
# - values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t4_8k"] # 6 1
# - values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t5_8k"] # 6 1
- values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t4_8k"] # 6 1
- values: ["--dataset_generator", "other", "--dataset_name", "chameleon_t5_8k"] # 6 1
# - values: ["--dataset_generator", "other", "--dataset_name", "hdbscan"] # 6 1
# - values: ["--dataset_generator", "other", "--dataset_name", "iris"] # 3 1
# - values: ["--dataset_generator", "other", "--dataset_name", "iris5"] # 3 1
# - values: ["--dataset_generator", "other", "--dataset_name", "square"] # 2 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "aggregation"] # 7 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "compound"] # 4, 5, 6 5
- values: ["--dataset_generator", "sipu", "--dataset_name", "aggregation"] # 7 1
- values: ["--dataset_generator", "sipu", "--dataset_name", "compound"] # 4, 5, 6 5
# - values: ["--dataset_generator", "sipu", "--dataset_name", "flame"] # 2 2
# - values: ["--dataset_generator", "sipu", "--dataset_name", "jain"] # 2 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "pathbased"] # 3, 4 2
# - values: ["--dataset_generator", "sipu", "--dataset_name", "r15"] # 8, 9, 15 3
# - values: ["--dataset_generator", "sipu", "--dataset_name", "spiral"] # 3 1
# - values: ["--dataset_generator", "sipu", "--dataset_name", "unbalance"] # 8 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "ecoli"] # 8 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "ionosphere"] # 2 1
- values: ["--dataset_generator", "uci", "--dataset_name", "ecoli"] # 8 1
- values: ["--dataset_generator", "uci", "--dataset_name", "ionosphere"] # 2 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "sonar"] # 2 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "statlog"] # 7 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "wdbc"] # 2 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "wine"] # 3 1
# - values: ["--dataset_generator", "uci", "--dataset_name", "yeast"] # 10 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "circles"] # 4 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "cross"] # 4 1
- values: ["--dataset_generator", "wut", "--dataset_name", "circles"] # 4 1
- values: ["--dataset_generator", "wut", "--dataset_name", "cross"] # 4 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "graph"] # 10 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "isolation"] # 3 1
# - values: ["--dataset_generator", "wut", "--dataset_name", "labirynth"] # 6 1
Expand Down Expand Up @@ -123,7 +123,7 @@ stages:
commit: "45e43d3"
parameters:
- values: ["--linkage", "complete"]
# - values: ["--linkage", "ward"]
- values: ["--linkage", "ward"]
# - values: ["--linkage", "average"]
# - values: ["--linkage", "weighted"]
# - values: ["--linkage", "median"]
Expand All @@ -137,7 +137,7 @@ stages:
commit: 5877378
parameters:
- values: ["--method", "birch"]
# - values: ["--method", "kmeans"]
- values: ["--method", "kmeans"]
# - values: ["--method", "spectral"] ## too slow
# - values: ["--method", "gm"]
- id: agglomerative
Expand All @@ -148,7 +148,7 @@ stages:
commit: 5454368
parameters:
- values: ["--linkage", "average"]
# - values: ["--linkage", "complete"]
- values: ["--linkage", "complete"]
# - values: ["--linkage", "ward"]
- id: genieclust
name: "genieclust"
Expand All @@ -158,7 +158,7 @@ stages:
commit: 6090043
parameters:
- values: ["--method", "genie", "--gini_threshold", 0.5]
# - values: ["--method", "gic"]
- values: ["--method", "gic"]
# - values: ["--method", "ica"]
- id: fcps
name: "fcps"
Expand All @@ -169,7 +169,7 @@ stages:
parameters:
# - values: ["--method", "FCPS_AdaptiveDensityPeak"] # not in Conda
- values: ["--method", "FCPS_Minimax", "--seed", 2]
# - values: ["--method", "FCPS_MinEnergy", "--seed", 2]
- values: ["--method", "FCPS_MinEnergy", "--seed", 2]
# - values: ["--method", "FCPS_HDBSCAN_2", "--seed", 2]
# - values: ["--method", "FCPS_HDBSCAN_4", "--seed", 2]
# - values: ["--method", "FCPS_HDBSCAN_8", "--seed", 2]
Expand Down Expand Up @@ -198,15 +198,15 @@ stages:
parameters:
- values: ["--metric", "normalized_clustering_accuracy"]
- values: ["--metric", "adjusted_fm_score"]
# - values: ["--metric", "adjusted_mi_score"]
# - values: ["--metric", "adjusted_rand_score"]
# - values: ["--metric", "fm_score"]
# - values: ["--metric", "mi_score"]
# - values: ["--metric", "normalized_clustering_accuracy"]
# - values: ["--metric", "normalized_mi_score"]
# - values: ["--metric", "normalized_pivoted_accuracy"]
# - values: ["--metric", "pair_sets_index"]
# - values: ["--metric", "rand_score"]
- values: ["--metric", "adjusted_mi_score"]
- values: ["--metric", "adjusted_rand_score"]
- values: ["--metric", "fm_score"]
- values: ["--metric", "mi_score"]
- values: ["--metric", "normalized_clustering_accuracy"]
- values: ["--metric", "normalized_mi_score"]
- values: ["--metric", "normalized_pivoted_accuracy"]
- values: ["--metric", "pair_sets_index"]
- values: ["--metric", "rand_score"]
inputs:
- entries:
- clustering.predicted_ks_range
Expand Down
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