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Simpraise #12

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cecceab
Adding new branch replace geno by id_geno and paramPlante and genotyp…
traquet Feb 24, 2020
71a4b9c
version with exit 0
dicombes Feb 25, 2020
1ec1bb3
Adding a new batch for simpraise which calls a script to build ParamP…
traquet Apr 1, 2020
0fce15f
A new script reproduction added which works on the seed production an…
traquet Apr 7, 2020
837e7e7
Coupling of morpho and genetic models built. The input genetic file i…
traquet Apr 14, 2020
4dee867
change lines 1333-1337 of l-grass to solve a bug with variable NextAc…
traquet Apr 15, 2020
365782d
delete two duplicates conditions from lines 1317-1335
traquet Apr 20, 2020
1026e91
add a new script to manage cuttings from the batch
traquet Apr 20, 2020
3063c75
Add a main file to run the lsystems with multiprocessoring
traquet May 12, 2020
36df530
inputs : donnees_C.csv replaced by liste_plantes.csv which contains a…
traquet Jun 17, 2020
a758a01
Add documentation files about Simpraise, an example of a simulation l…
traquet Jul 28, 2020
844dccd
Reformat the branch with an example of the Simpraise outputs
traquet Jul 29, 2020
7f07201
Approach the incubator version and move to python 3
traquet Jul 30, 2020
e3105f0
modif flowering_functions.py
traquet Jul 30, 2020
764fce1
Merge branch 'master' of https://github.com/openalea-incubator/lgrass…
traquet Jul 30, 2020
936b9d6
Solve bugs between MORPHOFLOR and SIMPRAISE examples. The test script…
traquet Aug 6, 2020
7fa7a44
Two files in order to build lgrass plantfusion
dicombes Mar 18, 2024
aafe1cd
files were not in the right branch
dicombes Mar 18, 2024
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Binary file added doc/Documentation Simpraise.pdf
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Binary file added doc/Rapport de la procédure SIMPRAISE.pdf
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Binary file added doc/schemas_simpraise.pdf
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4 changes: 4 additions & 0 deletions example/SIMPRAISE/graphs/.gitignore
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# Ignore everything in this directory
*
# Except this file
!.gitignore
Binary file added example/SIMPRAISE/inputs/Parametre_plante_Lgrass.xls
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62 changes: 62 additions & 0 deletions example/SIMPRAISE/inputs/insim.txt
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*rname
insim
*fname1
insim.001
*fname2
insim.002
*mono_dioecious
0
*status_gener
0
*mnum&fnum
2,2
*num_cand
4
*n_traits
1
*nloci
4,0,4
*gene_effects
1,1,0,0,0
1,1,0,0,0
1,1,0,0,0
1,1,0,0,0
3,0,0,1,0
3,0,0,1,0
3,0,0,1,0
3,0,0,1,0
*allele_freq
.5
.5
.5
.5
.5
.5
.5
.5
*genetic_map
1,0
1,0
1,0
1,90
2,0
2,0
2,0
2,90
*mating_design
0
1
0
0
1
0
0
0
0
0
0
1
0
0
1
0
5 changes: 5 additions & 0 deletions example/SIMPRAISE/inputs/liste_plantes.csv
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geno,C,Premiecroiss,Taillepointelineraire,INSERTIONLIMBE,LSTEP,Torsiongaine,curve,divergetalle,PREMIERCOUPE,DCOUP,FREQUCOUPE,DUREECOUPE,HCOUP,STOPTALLAGE,SENSETALLAGE,NBHORIZONMAX,epaisseurHorizon,longSegNorm,P_angInitMoyVertPrim,P_angInitETVertPrim,P_diamMin,P_diamMax,P_diamVM,P_elongMax,P_penteVitDiam,P_intensiteTropisme,P_ageMaturitePointe,P_distRamif,P_propDiamRamif,P_coeffVarDiamRamif,P_angLat,P_TMD,P_penteDureeVieDiamTMD,P_RootMasseVolumique,Alpha,Beta,t1,t2,t3,OptionRacine,temp_vern_min,temp_vern_inter,temp_vern_max,daily_vern_rate,basic_vern_rate,photoperiod_min,photoperiod_max,max_photo_ind_rate,coeff_primordia_emission_vegetative,coeff_primordia_emission_reproductive,leaf_primary_induction_coeff,leaf_secondary_induction_coeff,increase_growth_Premiecroiss,increase_growth_C,seeds_by_spikelet
1,0.8,91,5,40,1,0,0.3,30,10000,10000,10000,6000,30,3,0.27,60,50,1.9,0.7854,0.35,0.04,0.526747895,0.259695847,1.033309862,2.212,0.05,95,2.5,0.25,0.25,1.3,0.142,5000,1.42E-04,0.83729208,0.36933253,0.004720582,0.007108981,0.021608251,1,0,8,13,0.00135,0.01,10,16,1,1,2,1,1,1,1,3
3,0.9,91,5,40,1,0,0.3,30,10000,10000,10000,6000,30,3,0.27,60,50,1.9,0.7854,0.35,0.04,0.526747895,0.259695847,1.033309862,2.212,0.05,95,2.5,0.25,0.25,1.3,0.142,5000,1.42E-04,0.83729208,0.36933253,0.004720582,0.007108981,0.021608251,1,0,8,13,0.00135,0.01,10,16,1,1,2,1,1,1,1,3
4,0.8,91,5,40,1,0,0.3,30,10000,10000,10000,6000,30,3,0.27,60,50,1.9,0.7854,0.35,0.04,0.526747895,0.259695847,1.033309862,2.212,0.05,95,2.5,0.25,0.25,1.3,0.142,5000,1.42E-04,0.83729208,0.36933253,0.004720582,0.007108981,0.021608251,1,0,8,13,0.00135,0.01,10,16,1,1,2,1,1,1,1,3
5,0.9,91,5,40,1,0,0.3,30,10000,10000,10000,6000,30,3,0.27,60,50,1.9,0.7854,0.35,0.04,0.526747895,0.259695847,1.033309862,2.212,0.05,95,2.5,0.25,0.25,1.3,0.142,5000,1.42E-04,0.83729208,0.36933253,0.004720582,0.007108981,0.021608251,1,0,8,13,0.00135,0.01,10,16,1,1,2,1,1,1,1,3
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