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    • CAMISIM

      Public
      CAMISIM: Simulating metagenomes and microbial communities
      Roff
      4022281Updated Feb 18, 2026Feb 18, 2026
    • OPAL

      Public
      OPAL: Open-community Profiling Assessment tooL
      Python
      63051Updated Jan 6, 2026Jan 6, 2026
    • AMBER

      Public
      AMBER: Assessment of Metagenome BinnERs
      Python
      63311Updated Jan 6, 2026Jan 6, 2026
    • CAMITAX

      Public
      CAMITAX: Taxon labels for microbial genomes
      Nextflow
      53140Updated Dec 14, 2023Dec 14, 2023
    • Repository for codes, analyses and visualizations for the CAMI II challenges
      HTML
      61490Updated Sep 4, 2023Sep 4, 2023
    • Conda recipes for the bioconda channel.
      Shell
      3.8k000Updated May 22, 2023May 22, 2023
    • data

      Public
      Pointers to publicly available assembly, binning, and profiling results
      HTML
      5340Updated Nov 5, 2021Nov 5, 2021
    • 0000Updated Nov 6, 2020Nov 6, 2020
    • File format specifications, Presentation materials and other information
      1340Updated Nov 6, 2020Nov 6, 2020
    • Java
      1121Updated Oct 13, 2020Oct 13, 2020
    • Domains used for university-issued email addresses
      14000Updated May 26, 2020May 26, 2020
    • 1110Updated Mar 6, 2020Mar 6, 2020
    • Stefans Collection of Dockerfiles and helper scripts for profiling tools
      Perl
      4230Updated Feb 28, 2020Feb 28, 2020
    • Java
      0000Updated Nov 21, 2018Nov 21, 2018
    • CamiIO

      Public
      Java
      0000Updated Oct 12, 2018Oct 12, 2018
    • Directory containing example result visualizations and scripts for generating figures and tables
      R
      32120Updated Sep 17, 2018Sep 17, 2018
    • Supplementary data for CAMISIM
      0110Updated Jul 19, 2018Jul 19, 2018
    • The metagenome simulation pipeline was permanently moved to its new destination: https://github.com/CAMI-challenge/CAMISIM
      0100Updated Mar 8, 2018Mar 8, 2018
    • Python
      1130Updated Nov 2, 2017Nov 2, 2017
    • quast

      Public
      Shell
      0000Updated Sep 7, 2017Sep 7, 2017
    • Python
      0010Updated Aug 23, 2017Aug 23, 2017
    • A biobox for CAMI binning evaluation
      Python
      1140Updated Jul 19, 2017Jul 19, 2017
    • quast_frc

      Public
      Genome assembly evaluation tool
      C
      88000Updated May 5, 2017May 5, 2017
    • 0000Updated May 4, 2017May 4, 2017
    • Perl
      0000Updated Apr 23, 2017Apr 23, 2017
    • Biobox of the binning tool CONCOCT for the cami challenge
      Python
      0100Updated Jun 27, 2016Jun 27, 2016
    • Python
      0020Updated Jan 14, 2016Jan 14, 2016
    • Evaluation tools
      Python
      0020Updated Sep 3, 2015Sep 3, 2015
    • A container image to use for metagenomic community profiling programs
      Shell
      0010Updated May 5, 2015May 5, 2015
    • Shell
      0000Updated Feb 20, 2015Feb 20, 2015